View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2098_low_11 (Length: 337)

Name: NF2098_low_11
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2098_low_11
NF2098_low_11
[»] chr7 (4 HSPs)
chr7 (226-336)||(35119314-35119424)
chr7 (81-161)||(35119169-35119249)
chr7 (294-335)||(45709744-45709785)
chr7 (295-331)||(25956332-25956368)
[»] chr5 (3 HSPs)
chr5 (294-335)||(26598523-26598564)
chr5 (295-336)||(14495840-14495881)
chr5 (295-331)||(892514-892550)
[»] chr4 (2 HSPs)
chr4 (292-336)||(27965545-27965589)
chr4 (295-335)||(47044717-47044757)
[»] chr2 (2 HSPs)
chr2 (295-331)||(23922162-23922198)
chr2 (294-335)||(34041624-34041665)
[»] chr3 (4 HSPs)
chr3 (295-333)||(203090-203128)
chr3 (295-336)||(16991542-16991583)
chr3 (302-335)||(28928915-28928948)
chr3 (295-331)||(28562427-28562463)
[»] chr1 (4 HSPs)
chr1 (294-336)||(8177217-8177259)
chr1 (296-337)||(2069657-2069698)
chr1 (293-334)||(2074000-2074041)
chr1 (295-328)||(38978985-38979018)
[»] scaffold0070 (1 HSPs)
scaffold0070 (295-336)||(42555-42596)
[»] chr8 (2 HSPs)
chr8 (295-336)||(20994493-20994534)
chr8 (295-331)||(32157191-32157227)
[»] chr6 (2 HSPs)
chr6 (291-336)||(12188338-12188383)
chr6 (295-336)||(24641225-24641266)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 226 - 336
Target Start/End: Original strand, 35119314 - 35119424
Alignment:
Q  226 ctataaacttgcaagaaaaagattattaccatccaaatctattttgatcatttgaacttataagttacaaacccatttggattggcctagtggtattgac 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35119314 ctataaacttgcaagaaaaagattattaccatccaaatctattttgatcatttgaacttataagttacaaacccatttgggttggcctagtggtattgac 35119413  T
Q  326 ttgggatctgg 336  Q
    |||||||||||    
T  35119414 ttgggatctgg 35119424  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 35119169 - 35119249
Alignment:
Q  81 atacgatgttgtttgttcaggccctcgagttggattcttttcacaattctttatttaaaataacatatagtaaaattaaga 161  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35119169 atacgatgttgtttgttcagcccctcgagttggattcttttcacaattctttatttaaaataacatatagtaaaattaaga 35119249  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 45709785 - 45709744
Alignment:
Q  294 aaacccatttggattggcctagtggtattgacttgggatctg 335  Q
    |||||||||||| ||||||||||||||||  |||||||||||    
T  45709785 aaacccatttgggttggcctagtggtattagcttgggatctg 45709744  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 25956368 - 25956332
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttggga 331  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  25956368 aacccatttgggttggcctagtggtattggcttggga 25956332  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 26598523 - 26598564
Alignment:
Q  294 aaacccatttggattggcctagtggtattgacttgggatctg 335  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  26598523 aaacccacttggattggcctagtggtattggcttgggatctg 26598564  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 14495881 - 14495840
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttgggatctgg 336  Q
    ||||||||||| |||| || ||||||||||||||||||||||    
T  14495881 aacccatttgggttggtctggtggtattgacttgggatctgg 14495840  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 892550 - 892514
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttggga 331  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  892550 aacccatttgggttggcctagtggtattggcttggga 892514  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 27965589 - 27965545
Alignment:
Q  292 acaaacccatttggattggcctagtggtattgacttgggatctgg 336  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||    
T  27965589 acaaacccacttgggttggcctagtggtattggcttgggatctgg 27965545  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 47044717 - 47044757
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttgggatctg 335  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  47044717 aacccacttggattggcctggtggtattgacttgggatctg 47044757  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 23922198 - 23922162
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttggga 331  Q
    ||||||||||||||| |||||||||||||||||||||    
T  23922198 aacccatttggattgacctagtggtattgacttggga 23922162  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 34041665 - 34041624
Alignment:
Q  294 aaacccatttggattggcctagtggtattgacttgggatctg 335  Q
    ||||||| |||| ||||||||||||||||||||| |||||||    
T  34041665 aaacccacttgggttggcctagtggtattgacttaggatctg 34041624  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 203090 - 203128
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttgggatc 333  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  203090 aacccacttgggttggcctagtggtattgacttgggatc 203128  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 16991542 - 16991583
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttgggatctgg 336  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||    
T  16991542 aacccatttgggttggcctggtggtattggcttgggatctgg 16991583  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 28928948 - 28928915
Alignment:
Q  302 ttggattggcctagtggtattgacttgggatctg 335  Q
    |||||||||||||||||||||| |||||||||||    
T  28928948 ttggattggcctagtggtattggcttgggatctg 28928915  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 28562427 - 28562463
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttggga 331  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  28562427 aacccctttggagtggcctagtggtattgacttggga 28562463  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 8177259 - 8177217
Alignment:
Q  294 aaacccatttggattggcctagtggtattgacttgggatctgg 336  Q
    |||||||||||  ||||||||||||||||| ||||||||||||    
T  8177259 aaacccatttgagttggcctagtggtattggcttgggatctgg 8177217  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 2069657 - 2069698
Alignment:
Q  296 acccatttggattggcctagtggtattgacttgggatctggc 337  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  2069657 acccatttgggttggcctggttgtattgacttgggatctggc 2069698  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 2074000 - 2074041
Alignment:
Q  293 caaacccatttggattggcctagtggtattgacttgggatct 334  Q
    ||||||||||||| ||||||| || |||||||||||||||||    
T  2074000 caaacccatttgggttggcctggttgtattgacttgggatct 2074041  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 38979018 - 38978985
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttg 328  Q
    ||||||||||| ||||||||||||||||||||||    
T  38979018 aacccatttgggttggcctagtggtattgacttg 38978985  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 42596 - 42555
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttgggatctgg 336  Q
    |||||| |||| ||||||||||||||||||||||| ||||||    
T  42596 aacccagttgggttggcctagtggtattgacttggaatctgg 42555  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 20994534 - 20994493
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttgggatctgg 336  Q
    |||||| |||| ||||||||||||||||||||||||| ||||    
T  20994534 aacccacttgggttggcctagtggtattgacttgggacctgg 20994493  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 32157191 - 32157227
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttggga 331  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  32157191 aacccatttgggttggcctggtggtattgacttggga 32157227  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 12188383 - 12188338
Alignment:
Q  291 tacaaacccatttggattggcctagtggtattgacttgggatctgg 336  Q
    |||||||||| |||| ||||||||||||||||| ||||||| ||||    
T  12188383 tacaaacccacttgggttggcctagtggtattggcttgggacctgg 12188338  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 24641266 - 24641225
Alignment:
Q  295 aacccatttggattggcctagtggtattgacttgggatctgg 336  Q
    ||||||||||| ||||| | ||||||||||||||||||||||    
T  24641266 aacccatttgggttggcttggtggtattgacttgggatctgg 24641225  T

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