View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_low_12 (Length: 336)
Name: NF2098_low_12
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_low_12 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 336
Target Start/End: Complemental strand, 5451422 - 5451110
Alignment:
| Q |
21 |
ggaatacgatcatgaagacgttttcaagagaaagctacaacctttgatggagccgaactttgccaaatggaccggaagacacctcttcagaattcatcaa |
120 |
Q |
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| T |
5451422 |
ggaatacgatcatgaagacgttttcaagagaaagctacaacctttgatggagccaaactttgccaaatggaccggaagacacctcttcagatttcgtcaa |
5451323 |
T |
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| Q |
121 |
atgtgtagtcgtagccatcaaatcatacaccaagttataaggcgacttcaccaaaaaaccacctctatcctccgcattccaccaccacacatcgtccccc |
220 |
Q |
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| T |
5451322 |
atgtgtagtcatagccatcaaatcatacaccaagttataaggcgacttcaccaaaaaaccacctctatcctccgcattccactaccacacatctaccccc |
5451223 |
T |
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| Q |
221 |
tccgttggccccctttcctccaagactccgaaaaagatcctctaagtttacattttcccacacaaaaatatttctacgccactcaagggaccaaacttga |
320 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5451222 |
tccgttggcctcctttcctccaagactccg-aaaagatcctcttagtttacattttcccacac--aaatatttctacgccactcaagggaccaaacttga |
5451126 |
T |
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| Q |
321 |
acaccatcgatcaact |
336 |
Q |
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|||||||||||||||| |
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| T |
5451125 |
acaccatcgatcaact |
5451110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 20749104 - 20749189
Alignment:
| Q |
143 |
tcatacaccaagttataaggcgacttcaccaaaaaaccacctctatcctccgcattccaccaccacacatcgtccccctccgttgg |
228 |
Q |
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| T |
20749104 |
tcatacaccaagttataagacgatttcaccaaaaatccaccattatcctccacattccaccaccacatatgctccccctccattgg |
20749189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 20748984 - 20749042
Alignment:
| Q |
23 |
aatacgatcatgaagacgttttcaagagaaagctacaacctttgatggagccgaacttt |
81 |
Q |
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| T |
20748984 |
aatacgatctagaagaagttttcaagagaaagccacaacctttgacgaagccggacttt |
20749042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 31719209 - 31719102
Alignment:
| Q |
180 |
cacctctatcctccgcattccaccaccacacatcgtccccctccgttggccccctttcctccaagactccgaaaaagatcctctaagtttacattttccc |
279 |
Q |
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||||||| |||||||||||||||||||| ||||| || ||||| | ||||||||||||||||||||| ||| |||||||| ||||| || ||||||||| |
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| T |
31719209 |
cacctctctcctccgcattccaccaccatacatcctctccctctgatggccccctttcctccaagacaccg-aaaagatcttctaaaattgcattttccc |
31719111 |
T |
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| Q |
280 |
acacaaaaa |
288 |
Q |
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| T |
31719110 |
atacaaaaa |
31719102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 31719346 - 31719287
Alignment:
| Q |
33 |
tgaagacgttttcaagagaaagctacaacctttgatggagccgaactttgccaaatggac |
92 |
Q |
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|||||| |||| |||||||||||||| |||||||| ||| ||| |||||||||||| ||| |
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| T |
31719346 |
tgaagaagtttccaagagaaagctactacctttgacggaaccggactttgccaaattgac |
31719287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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