View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_low_24 (Length: 250)
Name: NF2098_low_24
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 32617042 - 32616811
Alignment:
| Q |
19 |
cgttttacatattgcaggtaatttttattttattttgaaatcgacaatgttagtattgttatcgataaaaaattaatgtatgatatgagaaacatgtatg |
118 |
Q |
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| T |
32617042 |
cgttttacatattgcaggtaattttaattttattttgaaatcgacaatgttagtgttgttatcgataaaaaattaacgtatgatatgagaaacatgtatg |
32616943 |
T |
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| Q |
119 |
tatatgtttggtttaatgtgatgattttgtaggccataacgttgagaaagtacccagcaccaatgtctctggcaacttgggtttgtttcattggcgcact |
218 |
Q |
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| T |
32616942 |
tatatgtttggtttaatgtgatgattttgtaggccataacgttgagaaagtacccagcaccaatgtctctggcaacttgggtttgtttcattggcgcact |
32616843 |
T |
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| Q |
219 |
tcaaagcttcgtggtagcattcttcgcagagc |
250 |
Q |
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| T |
32616842 |
tcaaagcttcgtggtagcattcttcgcagagc |
32616811 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 10624650 - 10624574
Alignment:
| Q |
149 |
aggccataacgttgagaaagtacccagcaccaatgtctctggcaacttgggtttgtttcattggcgcacttcaaagc |
225 |
Q |
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| T |
10624650 |
aggctataacattgagaaagtatccagcagagatgtcactggccacgtgggtttgctttattggtgcacttcaaagc |
10624574 |
T |
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