View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_low_8 (Length: 344)
Name: NF2098_low_8
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 30926063 - 30926236
Alignment:
| Q |
12 |
agcaaaggatggatcaaagaagctcatggatttgggtttggaactcattccgatggagcagattataagggatgctgtagaaagcttgaagagcaaagga |
111 |
Q |
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| T |
30926063 |
agcaaaggatggatcaaagaagctcatggatttgggtttggaattcattccgatggagcagattataagggatgctgtagaaagcttgaagagcaaagga |
30926162 |
T |
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| Q |
112 |
ctcatttcatgaatgttattactgttatctggaatccaagttactagagtatagactatatattgatgatgggtgt |
187 |
Q |
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| T |
30926163 |
ctcatttcatgaatgttattactgttatctggaacccaagttactagag--tagactatatattgatgatgggtgt |
30926236 |
T |
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Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 197 - 344
Target Start/End: Original strand, 30926291 - 30926437
Alignment:
| Q |
197 |
tgcttatatgcaaagtatctccaacttgaatacttattatagttattctgagtttcaataaataaaatgtgaattaaatagtgagacattaaggacttgc |
296 |
Q |
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| T |
30926291 |
tgcttatatgcaaagtatctccaacttgaatacttattatagttattctgagtttca-taaataaaatgtgaattaaatagtgagacattaaggacttgc |
30926389 |
T |
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| Q |
297 |
aaattgcaattatcatcatgtgcattttcaacatttatctaaagttta |
344 |
Q |
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| T |
30926390 |
aaattgcaattatcatcatgtgcattttcaacatttatctaaagttta |
30926437 |
T |
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