View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_low_9 (Length: 343)
Name: NF2098_low_9
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 5451136 - 5450808
Alignment:
| Q |
1 |
accaaccttgaacaccatcgatcaactcccacacatcacccaccttcgccaccttttggttagaaagagagaacaacctcgaaaaattaactcgaagagg |
100 |
Q |
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| T |
5451136 |
accaaacttgaacaccatcgatcaactcccacaaatctccccccttcgcctccttttggtttgtaagagagaacaacctcgaaaaattaactcgaagagg |
5451037 |
T |
|
| Q |
101 |
atcaattccagcccaagaatcgtgctaaaatttattattcaacccattgccaatccttttcgagacctctctattaaaccaattaactcccactgagagc |
200 |
Q |
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| T |
5451036 |
atcaattccggcccaagaatcgtgccaaaatttagtattcaacccattgtcaatccttttcaagacctctctattaaaccaattaactcccaccgagagc |
5450937 |
T |
|
| Q |
201 |
tccaaagaagtaatgtccttccaccatgaagaggaaaaccaaggccaagattccacattaccttccaacaaaccacacacccgatcaccaaagtatttat |
300 |
Q |
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| T |
5450936 |
tccaaagaagtaatgtccttccaccacgaagaggaaaaccaaggccaagattccacattactttccaacaaaccacacacccgatcaccaaagtatttat |
5450837 |
T |
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| Q |
301 |
taaaacgggaaaacacaacctttgaacat |
329 |
Q |
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| T |
5450836 |
taaaacgggaaaacacaaactttgaacat |
5450808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 20749806 - 20749895
Alignment:
| Q |
201 |
tccaaagaagtaatgtccttccaccatgaagaggaaaaccaaggccaagattccacattaccttccaacaaaccacacacccgatcacca |
290 |
Q |
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| T |
20749806 |
tccaaagaagcaatttccttccaccacgagaaggaaaaccaaggccaagattccccattatcttccaacaatcgacacacctgatcacca |
20749895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 45330985 - 45331024
Alignment:
| Q |
290 |
aaagtatttattaaaacgggaaaacacaacctttgaacat |
329 |
Q |
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| T |
45330985 |
aaagtatttattaaaacggggaagcacaacctttgaacat |
45331024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 30943420 - 30943457
Alignment:
| Q |
289 |
caaagtatttattaaaacgggaaaacacaacctttgaa |
326 |
Q |
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| T |
30943420 |
caaagtatttattaaaacgagaaaacacaacatttgaa |
30943457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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