View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20990_high_9 (Length: 316)
Name: NF20990_high_9
Description: NF20990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20990_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 46238454 - 46238729
Alignment:
| Q |
13 |
aaggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctc |
112 |
Q |
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| T |
46238454 |
aaggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctc |
46238553 |
T |
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| Q |
113 |
cagttgctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238554 |
cagttgctgatgtaagttgtctattatgtgaatccctttactttcctctgtttactcctatgaatatgcatgctatttctttgtttattcttgttgtggt |
46238653 |
T |
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| Q |
213 |
actgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgt |
288 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46238654 |
actgttaacgaggaaaaggaggaaaacgttaaagatgttgtgaattttttagggtttttaattgatgtgaacttgt |
46238729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 3456204 - 3455929
Alignment:
| Q |
13 |
aaggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctc |
112 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
3456204 |
aaggtgacgccgaaagaaggagagaagacgaacgaagttgcgaagaagatgcaggaaacaatcgaagggcaatcgacggttatgaaaaacgttggagctc |
3456105 |
T |
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| Q |
113 |
cagttgctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3456104 |
cagttgctgatgtaagttgtctattatgtgaatccctttactttcttctgtttactcctaagaatatgcatgctatttctttgtttattcttgttgtggt |
3456005 |
T |
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| Q |
213 |
actgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3456004 |
actgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggttttaaattgatgtgaacttgt |
3455929 |
T |
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