View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20991_high_1_N (Length: 528)
Name: NF20991_high_1_N
Description: NF20991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20991_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 32 - 514
Target Start/End: Complemental strand, 48270756 - 48270278
Alignment:
| Q |
32 |
cgtttgagcctttaataaacaaagcaaaacaaaatgaatatgtgctacgagttatacaaccatctataactagttacattttttagactaacaatttgcg |
131 |
Q |
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| T |
48270756 |
cgtttgagcctttaataaacaaagcaaaacaaaatgaatatgtgctacgagttatgcaaccatctataactagttacattttttagactaacaatttgcg |
48270657 |
T |
|
| Q |
132 |
cacctttgtcacaccaaccattttcaaaatttaaattctgtttgaatgactcgtagaggttgccatccaattgtgcatctaaatttgatttcttgtaggt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48270656 |
aacctttgtcacaccaaccattttcaaaatttaaattctgtttgaatgactcgtagaggttgccatccaattgtgcatctaaatttgatttcttgtaggt |
48270557 |
T |
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| Q |
232 |
tcctggattttcaccaaagtaatccttataaaaataggtttctttctccaatgtaggtttgctcagtacataaggtggaaagaaggtaccttgttgtata |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48270556 |
tcctggattttcaccaaagtaatccttataaaaataggtttctttctccaatgtaggtttgctcagtacataaggtggaaagaaggtaccttgttgtata |
48270457 |
T |
|
| Q |
332 |
ttccaaagatcctgatagccaaaaactgagtttggagaatcctgcatatccccaaacatataagatggtgatgatgtccatctcattgaacggtgcatcc |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
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| T |
48270456 |
ttccaaagatcctgatagccaaaaactgagtttggagaatcctgcatatccccaaacatataagatggtgatgatgtagatgatgttgaa----tcatcc |
48270361 |
T |
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| Q |
432 |
ttgtgatggtttacaatctttgattgagtaatgtccaacacaggtggttgtgcaacatcaatgtattcccctgtcctggaact |
514 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48270360 |
ttgtgatggtttacgatctttgattgagtaatgtccaacacaggtggttgtgcaacatcaatgtattcccctgtcctggaact |
48270278 |
T |
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