View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20991_high_2 (Length: 472)
Name: NF20991_high_2
Description: NF20991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20991_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 31 - 464
Target Start/End: Complemental strand, 31002239 - 31001806
Alignment:
| Q |
31 |
gttctctgcacagattagatatgcggtcatgtacaattgcattaatattcagcagatgatgatatgcaataaataaaagtatcactgcatactaattatg |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31002239 |
gttctctgcacagattagatatgcggtcatgtacaattgcattaatattcagcagatgatgatatgcaataaataaaagtatcactgcatactaattatg |
31002140 |
T |
|
| Q |
131 |
tccaatcaccaaaaatagagattgaagaataaatgtcaagactaatatccttgtgacgttcaactttcaaactcaagattttgtatttaaattttgaatc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31002139 |
tccaatcaccaaaaatagagattgaagaataaatgtcaagactaatatccttgtgacgttcaactttcaaactcaagattttgtatttaaattttgaatc |
31002040 |
T |
|
| Q |
231 |
ggatctcaattcgacgaccatggttaagccaagtatcaagtgtcaacttttttactacatgaaatcctatttcttacccagcttatcatgagttaaatgt |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31002039 |
ggatctcaattcgacgaccatggttaagccaagtatcaagtgtcaacttgtttactacatgaaatcctatttcttacccagcttatcatgagttaaatgt |
31001940 |
T |
|
| Q |
331 |
tggtgtcgtgaaaagacctcaagatgatgcaacatggagtaaaatgacgctgacatggtccaaagagacgccaccggaatattcctccgactaccaacat |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31001939 |
tggtgtcgtgaaaagacctcaagatgatgcaacatggagtaaaatgacgctgacatggtccaaagaggcgccaccggaatattcctccgactaccaacat |
31001840 |
T |
|
| Q |
431 |
caacaggccaccgcagctcaacgtcacctatgat |
464 |
Q |
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||||||||||||||||||||| |||||| ||||| |
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| T |
31001839 |
caacaggccaccgcagctcaatgtcaccaatgat |
31001806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 280 - 458
Target Start/End: Complemental strand, 30990747 - 30990569
Alignment:
| Q |
280 |
ttttactacatgaaatcctatttcttacccagcttatcatgagttaaatgttggtgtcgtgaaaagacctcaagatgatgcaacatggagtaaaatgacg |
379 |
Q |
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|||||||||||||| || |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30990747 |
ttttactacatgaattcatattgcttacccagcttatcatgagttaagtgctggtgtcgtgaaaagacctcaagatgatgcaacatggagtaaaatgacg |
30990648 |
T |
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| Q |
380 |
ctgacatggtccaaagagacgccaccggaatattcctccgactaccaacatcaacaggccaccgcagctcaacgtcacc |
458 |
Q |
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| T |
30990647 |
ccgacatggtccaaagagacgccaccgggatattcctccgattaccaacatcaacaggccaccgcagctcaacatcacc |
30990569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 276 - 458
Target Start/End: Complemental strand, 30995922 - 30995744
Alignment:
| Q |
276 |
acttttttactacatgaaatcctatttcttacccagcttatcatgagttaaatgttggtgtcgtgaaaagacctcaagatgatgcaacatggagtaaaat |
375 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
30995922 |
acttttttactacat----tcctattgcttacccagcttatcatgagttaagtgttgatgacgtgaaaagacctcaagatgatgcaacatggagtaaaat |
30995827 |
T |
|
| Q |
376 |
gacgctgacatggtccaaagagacgccaccggaatattcctccgactaccaacatcaacaggccaccgcagctcaacgtcacc |
458 |
Q |
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| T |
30995826 |
gatgcggacatagtccaaagagatgccaccggaatattcctccgattaccaacgtcaacaggccaccgcagttcaacatcacc |
30995744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 30999074 - 30998970
Alignment:
| Q |
32 |
ttctctgcacagattagatatgcggtcatgtacaattgcattaatattcagcagatgatg----atatgcaataaataaaagtatcactgcatactaatt |
127 |
Q |
| |
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|||||||||||||||||||| || ||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||||||||| |||| ||| | |
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| T |
30999074 |
ttctctgcacagattagataagcagtcatgtacaattgcattaatttttagcagataatgatatatatgcaataaataaaagtatcactccatattaaat |
30998975 |
T |
|
| Q |
128 |
atgtc |
132 |
Q |
| |
|
||||| |
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|
| T |
30998974 |
atgtc |
30998970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 336 - 440
Target Start/End: Complemental strand, 30987991 - 30987887
Alignment:
| Q |
336 |
tcgtgaaaagacctcaagatgatgcaacatggagtaaaatgacgctgacatggtccaaagagacgccaccggaatattcctccgactaccaacatcaaca |
435 |
Q |
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||||||||| || ||||||||||||||||| |||||||| ||||| ||||| ||||||| | ||||||||||| |||||||||| ||||||||| ||| |
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| T |
30987991 |
tcgtgaaaacacatcaagatgatgcaacatagagtaaaacgacgcagacatagtccaaaacgccgccaccggaacattcctccgattaccaacattaact |
30987892 |
T |
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| Q |
436 |
ggcca |
440 |
Q |
| |
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||||| |
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| T |
30987891 |
ggcca |
30987887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 30992104 - 30992041
Alignment:
| Q |
31 |
gttctctgcacagattagatatgcggtcatgtacaattgcattaatattcagcagatgatgata |
94 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
30992104 |
gttctctgcacagattagatacgcaggcatgtacaattgcattaatattcggcagatgatgata |
30992041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 458
Target Start/End: Complemental strand, 30994006 - 30993869
Alignment:
| Q |
321 |
agttaaatgttggtgtcgtgaaaagacctcaagatgatgcaacatggagtaaaatgacgctgacatggtccaaagagacgccaccggaatattcctccga |
420 |
Q |
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|||||| || |||| || |||||| || ||||||||||||||||| || ||||| | || ||||| ||||||| | || ||||||| ||||||| || |
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| T |
30994006 |
agttaagtgatggtttcttgaaaacacatcaagatgatgcaacattgaataaaacgttgcagacatagtccaaaacgccgataccggaacattcctctga |
30993907 |
T |
|
| Q |
421 |
ctaccaacatcaacaggccaccgcagctcaacgtcacc |
458 |
Q |
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|||||||||||||||||| | ||||||||| ||||| |
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| T |
30993906 |
tgaccaacatcaacaggccatcacagctcaacatcacc |
30993869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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