View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20991_high_4 (Length: 389)
Name: NF20991_high_4
Description: NF20991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20991_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 28 - 366
Target Start/End: Complemental strand, 31649881 - 31649542
Alignment:
| Q |
28 |
tatctaacacaattttcttttcatcttagcgtgtggcgtgcttgctaagaaaagttgtccaagagattgagcggcgtatatctacacaacaagagcattt |
127 |
Q |
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| T |
31649881 |
tatctaacaaaattttcttttcatcttagcgtgtggcgtgcttgctaagaaaagttgtccaagagattgagcggcgtatatctacacaacaagagcattt |
31649782 |
T |
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| Q |
128 |
aaaaactgtatgtcgattacatcgtttttagaaagtaaatgagacttagttttgtccgtttttcttgnnnnnnnnn-gttgctgtcttaccctttgtctt |
226 |
Q |
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| T |
31649781 |
aaaaactgtatgtcgattacatcgtttttagaaagtaaacgagacctagttttgtccgtttttctcgttttttttatgttgctgtcttaccctttgtctt |
31649682 |
T |
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| Q |
227 |
cagcaaaacaatcttttcaagactcgtgaagaaaaatataaatcaagaataacagtacttgaggctcttgcatcaggaacaactgaagagagtaaggtct |
326 |
Q |
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| T |
31649681 |
cagcaaaacaatcttttcaagactcgtgaagaaaaatataaatcaagaataacagtacttgaggctcttgcatcaggaacaactgaagagagtaaggtct |
31649582 |
T |
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| Q |
327 |
caaaggtagttctatctatttatcttattaaaaatgatga |
366 |
Q |
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| T |
31649581 |
caaaggtagttctatctatttatcttattaaaaatgatga |
31649542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 43878792 - 43878891
Alignment:
| Q |
225 |
ttcagcaaaacaatcttttcaagactcgtgaagaaaaatataaatcaagaataacagtacttgaggctcttgcatcaggaacaactgaagagagtaaggt |
324 |
Q |
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| T |
43878792 |
ttcagcaaagtaatctttttaaggcccgggaagaaaaatatcagtcgagaataagagtactcgaggcacttgcatctggaactagagaagagagtgaggt |
43878891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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