View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20991_high_5 (Length: 331)
Name: NF20991_high_5
Description: NF20991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20991_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 40416460 - 40416758
Alignment:
| Q |
9 |
ttcaattgccctctacaactttccttcgtgtaaggatgttatatctagaaataccatcacatatatccaaataatgtgtctcatggatggctaggaatat |
108 |
Q |
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| T |
40416460 |
ttcaattgccctctacaactttccttcgtgtaaggatgttatatctagaaataccatcacatatatccaaataatgtgtctcatggatggctaggaatat |
40416559 |
T |
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| Q |
109 |
aatctaaatattgagctagcatgctccaagtttactatagaatggatacaattagatgccacgatcgagagagatagtctgcatgtatctaaactggcg- |
207 |
Q |
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| T |
40416560 |
aatctaaatattgagctagcatgctccaagtttactatagaatggatacaattagatgccacgatcgagagagatagtctgcatgtatctaaactgggga |
40416659 |
T |
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| Q |
208 |
----caagtctcatctaacgagcatcgcgtttgatccatcctaaatagaaccaattggcatgtaagcatgtatgtggcatacatacccctcatagttag |
302 |
Q |
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| T |
40416660 |
ggataacataccatctaacgagcatcgcgtttgatccatcctaaatagaaccaattggcatgtaaggatgtatgtggcatacatacccctcctagttag |
40416758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 110 - 302
Target Start/End: Complemental strand, 39982527 - 39982330
Alignment:
| Q |
110 |
atctaaatattgagctagcatgctccaagtttactatagaatggatacaattagatgccacgatcgagagagatagtctgcatgtatctaaactggcgc- |
208 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||| | |
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| T |
39982527 |
atctaaatattgagctagcgtgctccaagtttactatagaatggatacaattggattcctcgatcgagagagatagtttgcatgtatctaaactggggag |
39982428 |
T |
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| Q |
209 |
----aagtctcatctaacgagcatcgcgtttgatccatcctaaatagaaccaattggcatgtaagcatgtatgtggcatacatacccctcatagttag |
302 |
Q |
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| T |
39982427 |
gataacataccatctaacgagcatcgcgtttgatccatcctaaatagaaccaattggcatgtaaggatgtatgtggcatacatacccctcctagttag |
39982330 |
T |
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