View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20992_high_2 (Length: 669)
Name: NF20992_high_2
Description: NF20992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20992_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 614; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 20 - 654
Target Start/End: Original strand, 26542116 - 26542754
Alignment:
| Q |
20 |
ccacgtaccttacaatacatttttgtaaggttgagttatgagtgttaaaggggaatttgattgtgactcgccaatttattcgaaaaactttcttccgatt |
119 |
Q |
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| T |
26542116 |
ccacgtaccttacaatacatttttgtaaggttgagttatgagtgttaaaggggaatttgattgtgactcgccaatttattcgaaaaactttcttccgatt |
26542215 |
T |
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| Q |
120 |
ggccaaaaatgtaattagttaatttttctttcccaagtttaaaggtcccaag----ttataagtacaactattagaatttaggattttattacaagttga |
215 |
Q |
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| T |
26542216 |
ggccaaaaatgtaattagttaatttttctttcccaagtttaaaggtcccaagagagttataagtacaattattagaatttaggattttattacaagttga |
26542315 |
T |
|
| Q |
216 |
atattatgaagtcgttgcaatgcaaataggcgtttcccatattatatttactatcaagtgtataagaaagaaattattggcttaagaatctttctttacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26542316 |
atattatgaagtcgttgcaatgcaaataggcgtttcccatattatatttactatcaagtgtataagaaagaaattattggcttaagaatctttctttacc |
26542415 |
T |
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| Q |
316 |
atttttatttccacgctcttatcttttttctattgtatgatgttcttctttcgattcaaattgtttgcagggtcttttttgaattctctcaattttcatg |
415 |
Q |
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| T |
26542416 |
atttttatttccacgctcttatcttttttctattgtatgatgttcttctttcgattcaaattgtttgcagggtcttttttgaattctctcaattttcatg |
26542515 |
T |
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| Q |
416 |
tagaaatcatttataatttggaaagtttttccaatctaattttaccgtaataaaaaacccaatccgtgagaagcatgcgatagtaggccgaataatcacg |
515 |
Q |
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| T |
26542516 |
tagaaatcatttataatttggaaagtttttccaatctaattttaccgtaataaaaaacccaatccgtgagaagcatgcgatagtaggccgaataatcacg |
26542615 |
T |
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| Q |
516 |
agctcggcacgagggcgagcaggaggaacatctcccccttatctgatattaaaaggtcatgtgtatatggcactttgactaagtaccccctttttacata |
615 |
Q |
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| T |
26542616 |
agctcggcacaagggcgagcaggaggaacatctcccccttatctgatattaaaaggtcatgtgtatatggcactttgactaagtaccccctttttacata |
26542715 |
T |
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| Q |
616 |
tgcactggattcggtcaagagagactgcaccatcctatg |
654 |
Q |
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| T |
26542716 |
tgcactggattcggtcaagagagactgcaccatcctatg |
26542754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 26548853 - 26548885
Alignment:
| Q |
25 |
taccttacaatacatttttgtaaggttgagtta |
57 |
Q |
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| T |
26548853 |
taccttacaatccatttttgtaaggttgagtta |
26548885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 6432886 - 6432967
Alignment:
| Q |
171 |
gttataagtacaactattagaatttaggattttatta-caagttgaatattatgaagtcgttgcaatgcaaataggcgtttc |
251 |
Q |
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| T |
6432886 |
gttataagtataattattagaatttaggattttattatgaagttgaatgttatgaagtcattacaatgcaagtaggcatttc |
6432967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 308 - 379
Target Start/End: Original strand, 1329133 - 1329204
Alignment:
| Q |
308 |
tctttaccatttttatttccacgctcttatcttttttctattgtatgatgttcttctttcgattcaaattgt |
379 |
Q |
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| T |
1329133 |
tctttaccatttctatttccacgctcttctctcttttctattgcataatgttcttctatccattccaattgt |
1329204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 44187878 - 44187950
Alignment:
| Q |
307 |
ttctttaccatttttatttccacgctcttatcttttttctattgtatgatgttcttctttcgattcaaattgt |
379 |
Q |
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|||||||||||||||||||| | | | || ||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
44187878 |
ttctttaccatttttatttctatgtttttctctcttttctattgtatattgttcttctttcgattccaattgt |
44187950 |
T |
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