View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20992_low_1 (Length: 773)

Name: NF20992_low_1
Description: NF20992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20992_low_1
NF20992_low_1
[»] chr3 (3 HSPs)
chr3 (420-759)||(13018378-13018717)
chr3 (15-368)||(13017973-13018331)
chr3 (15-237)||(823082-823305)
[»] chr7 (4 HSPs)
chr7 (95-293)||(40292775-40292973)
chr7 (66-187)||(22567828-22567949)
chr7 (23-187)||(23983465-23983632)
chr7 (101-187)||(28534262-28534348)
[»] chr8 (2 HSPs)
chr8 (134-295)||(1760761-1760922)
chr8 (93-187)||(17819535-17819627)
[»] chr6 (1 HSPs)
chr6 (37-118)||(20500244-20500326)
[»] chr1 (2 HSPs)
chr1 (101-187)||(26602582-26602668)
chr1 (132-169)||(46768455-46768492)
[»] chr2 (3 HSPs)
chr2 (96-169)||(13699032-13699105)
chr2 (195-294)||(20572226-20572324)
chr2 (201-278)||(30966984-30967061)
[»] chr5 (1 HSPs)
chr5 (59-187)||(39183896-39184023)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 420 - 759
Target Start/End: Original strand, 13018378 - 13018717
Alignment:
Q  420 atcatgaatatcgttagtgctgctaggaaagaaatataaaagtagctgcagatgagattgctcagcatgcatctcggcgcacatgacattggatccaatt 519  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13018378 atcatgaatatcgttaatgctgctgggaaagaaatataaaagtagctgcagatgagattgctcagcatgcatctcggcgcacatgacattggatccaatt 13018477  T
Q  520 aacagcgaggacggtgctattggtcacgtgcatctctcannnnnnnatttcattctacatttaaaatgaatcaaaacccttactcnnnnnnntaagaaaa 619  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||       |||| |||    
T  13018478 aacagcgaggacggtgctattggtcacgtgcatctctcatttttttatttcattctccatttaaaatgaatcaaaacccttactcaaaaaaataagtaaa 13018577  T
Q  620 agaaatcaaccctgagagggtccaacaaagatataatacgatctttgcatatgctctctgcgtgccacttcatgtattataaattaaaccttttaataat 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13018578 agaaatcaaccctgagagggtccaacaaagatataatacgatctttgcatatgctctctgcgtgccacttcatgtattataaattaaaccttttaataat 13018677  T
Q  720 tagtctgttttatcagacattattttttaactattcatct 759  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13018678 tagtctgttttatcagacattattttttaactattcatct 13018717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 13017973 - 13018331
Alignment:
Q  15 tcagatactacaagttaaaggcgttgtataaaagcgaaacatccaaaataaacaccataaa-gacacccctacgtataccacctaatcaaactctacctt 113  Q
    ||||| ||||||| |||||||||||||||| |  |||||||||||||||||||| |||||| |||||||||||  |||||||||||||||||||||||||    
T  13017973 tcagagactacaaattaaaggcgttgtatatagacgaaacatccaaaataaacatcataaaagacacccctacacataccacctaatcaaactctacctt 13018072  T
Q  114 caacaaccataagaatatcacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccactnnnnnnncgatatcaataaccaccca 213  Q
     |||||  || || | |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||        |||||| || | ||||||    
T  13018073 taacaataatgaggacatcatccaccaaaattaacttcaccacctaaaacagactccatcacaaaacaaccactaaaaaat-gatatccatgatcaccca 13018171  T
Q  214 tcgccactactcactttaaaagaacgtccctctaaatcaaacatcctgtcctcatcactatagctaagccacattcgaaaatatcgtattaaaaagtaaa 313  Q
    | ||||||||||||  |||||||||| || ||||||||||||| |||||||||||||| |||| | ||||||||   |||||||| |||| |||||||||    
T  13018172 ttgccactactcaccctaaaagaacgcccatctaaatcaaacaccctgtcctcatcaccatagttgagccacatctaaaaatatcttattgaaaagtaaa 13018271  T
Q  314 aattata--tgaatca---attgtttaagctaaaattgacaacagatgacatggcatttc 368  Q
    |||||||  |||||||    ||||||||||||||||||||||||||||||||||||||||    
T  13018272 aattatatttgaatcacttgttgtttaagctaaaattgacaacagatgacatggcatttc 13018331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 823082 - 823305
Alignment:
Q  15 tcagatactacaagttaaaggcgttgtataaaagcgaaacatccaaaataaacaccataaa--gacacccctacgtataccacctaatcaaactctacct 112  Q
    ||||| |||||||||||||||||| ||||| ||| | |||| ||||| |||||||||||||  ||||||| |||  | | | ||||||||| | ||||||    
T  823082 tcagagactacaagttaaaggcgtcgtatataaggggaacacccaaattaaacaccataaaaagacacccttacacacaacccctaatcaacccctacct 823181  T
Q  113 tcaacaaccataagaatatcacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccactnnnnnnncgatatcaataaccaccc 212  Q
    |||||| |||| || | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||       ||||||| ||||||||||    
T  823182 tcaacacccatgaggacatcacccaccaaaattaacttcaccacctaaaacaaactccatcacaaaacaaccact-gaaaaacgatatccataaccaccc 823280  T
Q  213 atcgccactactcactttaaaagaa 237  Q
     ||||| ||||||||  ||||||||    
T  823281 ttcgcctctactcaccctaaaagaa 823305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 95 - 293
Target Start/End: Original strand, 40292775 - 40292973
Alignment:
Q  95 cctaatcaaactctaccttcaacaaccataagaatatcacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccactnnnnnnn 194  Q
    ||||||||||| ||| |||||||| |||  || | ||||| ||||||||||||||||| | |||||||||||||  ||||||||||||||| |           
T  40292775 cctaatcaaaccctatcttcaacacccacgaggacatcacacaccaaaattaacttcatcgcctaaaacagacttcatcacaaaacaaccattgaaaaaa 40292874  T
Q  195 cgatatcaataaccacccatcgccactactcactttaaaagaacgtccctctaaatcaaacatcctgtcctcatcactatagctaagccacattcgaaa 293  Q
    ||||||| |||||||| ||||||| ||||||||  |||||||||  || | ||| ||||||| | ||||||||| || |||||| |||| ||| |||||    
T  40292875 cgatatccataaccactcatcgcctctactcaccctaaaagaacacccttataattcaaacaccttgtcctcattaccatagctgagccgcatccgaaa 40292973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 22567828 - 22567949
Alignment:
Q  66 acaccataaagacacccctacgtataccacctaatcaaactctaccttcaacaaccataagaatatcacccaccaaaattaacttcaccacctaaaacag 165  Q
    |||||||||| ||| ||||||  | | |||||| |||||| |||||||||||| || || | | | || ||||||||||  || ||||||||||||||||    
T  22567828 acaccataaaaacagccctacacacaacacctagtcaaaccctaccttcaacacccctagggacaacatccaccaaaatacacatcaccacctaaaacag 22567927  T
Q  166 actcaatcacaaaacaaccact 187  Q
    ||||  |||| |||||||||||    
T  22567928 actctttcacgaaacaaccact 22567949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 23983632 - 23983465
Alignment:
Q  23 tacaagttaaaggcgttgtataaaagcgaaacatccaaaa-taaacaccataaa-gacacccctacgtataccacctaatcaaactctaccttcaacaac 120  Q
    ||||| |||||||| | ||||| | ||| | ||||||||| |||||| |||||| |||| ||||||  | | |||||| ||| ||  |||||||||||      
T  23983632 tacaaattaaaggcatcgtatataggcggagcatccaaaaataaacatcataaaagacatccctacacacaacacctagtcataccttaccttcaacaca 23983533  T
Q  121 cataagaatatcacccaccaaaattaacttcaccacctaaaacagactcaatcac-aaaacaaccact 187  Q
    ||| || | | ||||||||||||| |||  |||||||||||||||||||| |||| ||||||||||||    
T  23983532 catgaggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccact 23983465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 28534262 - 28534348
Alignment:
Q  101 caaactctaccttcaacaaccataagaatatcacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccact 187  Q
    ||||| |||||||||||| || | || | | ||||||||||||| ||| ||||||||||||||||||||  |||| |||| ||||||    
T  28534262 caaaccctaccttcaacacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacgaaacgaccact 28534348  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 134 - 295
Target Start/End: Complemental strand, 1760922 - 1760761
Alignment:
Q  134 cccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccactnnnnnnncgatatcaataaccacccatcgccactactcactttaaa 233  Q
    |||| |||||| || || |||||||||||||||||| | ||| |||||||| ||        |||||| |||||||  ||||| ||||||||||| ||||    
T  1760922 cccatcaaaataaatttgaccacctaaaacagactccaccacgaaacaaccgctgaaaaaatgatatctataaccattcatcgtcactactcactctaaa 1760823  T
Q  234 agaacgtccctctaaatcaaacatcctgtcctcatcactatagctaagccacattcgaaaat 295  Q
    | |||  ||||||| |||||||| ||||| ||||||||  |||||||||||||| |||||||    
T  1760822 ataacacccctctacatcaaacaccctgtactcatcaccctagctaagccacatccgaaaat 1760761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 17819535 - 17819627
Alignment:
Q  93 cacctaatcaaactctaccttcaacaaccataagaatatcacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccact 187  Q
    ||||||| ||||  |||||||||||| ||||||||| | || |||||||||  |||||||||||||||| || |||| ||| | |||||||||||    
T  17819535 cacctaaccaaaacctaccttcaacacccataagaaca-caaccaccaaaaccaacttcaccacctaaatcaaactccatcgc-aaacaaccact 17819627  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 20500326 - 20500244
Alignment:
Q  37 gttgtataaaagcgaaacatccaaaataaacaccat-aaagacacccctacgtataccacctaatcaaactctaccttcaaca 118  Q
    |||||||| | ||| |||| |||||||||||||||| |||||||| | |||| | ||||||||| ||||| ||||||||||||    
T  20500326 gttgtatataggcggaacacccaaaataaacaccataaaagacactcatacgcaaaccacctaaccaaaccctaccttcaaca 20500244  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 26602582 - 26602668
Alignment:
Q  101 caaactctaccttcaacaaccataagaatatcacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccact 187  Q
    ||||| |||||||||||||||   || | | ||||||  ||||| ||| ||||||||||| ||||||||| ||||||||||||||||    
T  26602582 caaaccctaccttcaacaaccccgaggacaacacccatgaaaataaacatcaccacctaacacagactcattcacaaaacaaccact 26602668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 46768492 - 46768455
Alignment:
Q  132 cacccaccaaaattaacttcaccacctaaaacagactc 169  Q
    |||||||||||||| || ||||||||||||||||||||    
T  46768492 cacccaccaaaattcacgtcaccacctaaaacagactc 46768455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 13699032 - 13699105
Alignment:
Q  96 ctaatcaaactctaccttcaacaaccataagaatatcacccaccaaaattaacttcaccacctaaaacagactc 169  Q
    |||||||||| |||||||||||| || | |  ||| ||||||||||||| ||| ||||||||||||||| ||||    
T  13699032 ctaatcaaaccctaccttcaacacccctgaagataacacccaccaaaataaacatcaccacctaaaacacactc 13699105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 20572324 - 20572226
Alignment:
Q  195 cgatatcaataaccacccatcgccactactcactttaaaagaacgtccctctaaatcaaacatcctgtcctcatcactatagctaagccacattcgaaaa 294  Q
    ||||||| ||||||||| ||||||||||||||| | ||||||||  |||||||||| ||||   |  |||||||||||| |||||| ||| || ||||||    
T  20572324 cgatatccataaccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctcatcactaaagctaaaccatatccgaaaa 20572226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 30966984 - 30967061
Alignment:
Q  201 caataaccacccatcgccactactcactttaaaagaacgtccctctaaatcaaacatcctgtcctcatcactatagct 278  Q
    ||||||||||||||||| |||||||||   |||| | |  |||||||||||||||| | ||| |||||||| ||||||    
T  30966984 caataaccacccatcgctactactcacccaaaaaaatcacccctctaaatcaaacaccatgttctcatcaccatagct 30967061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 39183896 - 39184023
Alignment:
Q  59 aaaataaacaccataaagacacccctacgtataccacctaatcaaactctaccttcaacaaccataagaatatcacccaccaaaattaacttcaccacct 158  Q
    ||||||| || ||||||||||||||| |  ||| ||| || |||| | |||||||||||| || | || | | ||||||| ||||| ||  |||||||||    
T  39183896 aaaataaccatcataaagacacccctcctcataacacttagtcaacc-ctaccttcaacacccttgaggacaacacccactaaaataaagatcaccacct 39183994  T
Q  159 aaaacagactcaatcacaaaacaaccact 187  Q
    ||||||||||| ||||| |||| ||||||    
T  39183995 aaaacagactctatcacgaaacgaccact 39184023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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