View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20992_low_3 (Length: 662)

Name: NF20992_low_3
Description: NF20992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20992_low_3
NF20992_low_3
[»] chr3 (3 HSPs)
chr3 (309-648)||(13018378-13018717)
chr3 (19-257)||(13018089-13018331)
chr3 (19-126)||(823199-823305)
[»] chr7 (4 HSPs)
chr7 (19-182)||(40292810-40292973)
chr7 (21-76)||(23983465-23983521)
chr7 (21-76)||(28534293-28534348)
chr7 (24-76)||(22567897-22567949)
[»] chr8 (1 HSPs)
chr8 (23-184)||(1760761-1760922)
[»] chr2 (2 HSPs)
chr2 (84-183)||(20572226-20572324)
chr2 (90-167)||(30966984-30967061)
[»] chr1 (2 HSPs)
chr1 (29-76)||(26602621-26602668)
chr1 (21-58)||(46768455-46768492)
[»] chr6 (1 HSPs)
chr6 (24-68)||(15120370-15120414)
[»] chr5 (1 HSPs)
chr5 (21-57)||(26045728-26045764)
[»] chr4 (2 HSPs)
chr4 (84-160)||(12296336-12296412)
chr4 (92-176)||(41231617-41231700)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 309 - 648
Target Start/End: Original strand, 13018378 - 13018717
Alignment:
Q  309 atcatgaatatcgttagtgctgctaggaaagaaatataaaagtagctgcagatgagattgctcagcatgcatctcggcgcacatgacattggatccaatt 408  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13018378 atcatgaatatcgttaatgctgctgggaaagaaatataaaagtagctgcagatgagattgctcagcatgcatctcggcgcacatgacattggatccaatt 13018477  T
Q  409 aacagcgaggacggtgctattggtcacgtgcatctctcannnnnnnatttcattctacatttaaaatgaatcaaaacccttactcnnnnnnntaagaaaa 508  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||       |||| |||    
T  13018478 aacagcgaggacggtgctattggtcacgtgcatctctcatttttttatttcattctccatttaaaatgaatcaaaacccttactcaaaaaaataagtaaa 13018577  T
Q  509 agaaatcaaccctgagagggtccaacaaagatataatacgatctttgcatatgctctctgcgtgccacttcatgtattataaattaaaccttttaataat 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13018578 agaaatcaaccctgagagggtccaacaaagatataatacgatctttgcatatgctctctgcgtgccacttcatgtattataaattaaaccttttaataat 13018677  T
Q  609 tagtctgttttatcagacattattttttaactattcatct 648  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13018678 tagtctgttttatcagacattattttttaactattcatct 13018717  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 13018089 - 13018331
Alignment:
Q  19 atcacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccactnnnnnnncgatatcaataaccacccatcgccactactcactt 118  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||        |||||| || | ||||||| ||||||||||||      
T  13018089 atcatccaccaaaattaacttcaccacctaaaacagactccatcacaaaacaaccactaaaaaat-gatatccatgatcacccattgccactactcaccc 13018187  T
Q  119 taaaagaacgtccctctaaatcaaacatcctgtcctcatcactatagctaagccacattcgaaaatatcgtattaaaaagtaaaaattata--tgaatca 216  Q
    |||||||||| || ||||||||||||| |||||||||||||| |||| | ||||||||   |||||||| |||| ||||||||||||||||  |||||||    
T  13018188 taaaagaacgcccatctaaatcaaacaccctgtcctcatcaccatagttgagccacatctaaaaatatcttattgaaaagtaaaaattatatttgaatca 13018287  T
Q  217 ---attgtttaagctaaaattgacaacagatgacatggcatttc 257  Q
        ||||||||||||||||||||||||||||||||||||||||    
T  13018288 cttgttgtttaagctaaaattgacaacagatgacatggcatttc 13018331  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 823199 - 823305
Alignment:
Q  19 atcacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccactnnnnnnncgatatcaataaccacccatcgccactactcactt 118  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||       ||||||| |||||||||| ||||| ||||||||      
T  823199 atcacccaccaaaattaacttcaccacctaaaacaaactccatcacaaaacaaccact-gaaaaacgatatccataaccacccttcgcctctactcaccc 823297  T
Q  119 taaaagaa 126  Q
    ||||||||    
T  823298 taaaagaa 823305  T

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Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 40292810 - 40292973
Alignment:
Q  19 atcacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccactnnnnnnncgatatcaataaccacccatcgccactactcactt 118  Q
    ||||| ||||||||||||||||| | |||||||||||||  ||||||||||||||| |       ||||||| |||||||| ||||||| ||||||||      
T  40292810 atcacacaccaaaattaacttcatcgcctaaaacagacttcatcacaaaacaaccattgaaaaaacgatatccataaccactcatcgcctctactcaccc 40292909  T
Q  119 taaaagaacgtccctctaaatcaaacatcctgtcctcatcactatagctaagccacattcgaaa 182  Q
    |||||||||  || | ||| ||||||| | ||||||||| || |||||| |||| ||| |||||    
T  40292910 taaaagaacacccttataattcaaacaccttgtcctcattaccatagctgagccgcatccgaaa 40292973  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 23983521 - 23983465
Alignment:
Q  21 cacccaccaaaattaacttcaccacctaaaacagactcaatcac-aaaacaaccact 76  Q
    ||||||||||||| |||  |||||||||||||||||||| |||| ||||||||||||    
T  23983521 cacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccact 23983465  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 28534293 - 28534348
Alignment:
Q  21 cacccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccact 76  Q
    ||||||||||||| ||| ||||||||||||||||||||  |||| |||| ||||||    
T  28534293 cacccaccaaaataaacatcaccacctaaaacagactctttcacgaaacgaccact 28534348  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 22567897 - 22567949
Alignment:
Q  24 ccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccact 76  Q
    ||||||||||  || ||||||||||||||||||||  |||| |||||||||||    
T  22567897 ccaccaaaatacacatcaccacctaaaacagactctttcacgaaacaaccact 22567949  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 1760922 - 1760761
Alignment:
Q  23 cccaccaaaattaacttcaccacctaaaacagactcaatcacaaaacaaccactnnnnnnncgatatcaataaccacccatcgccactactcactttaaa 122  Q
    |||| |||||| || || |||||||||||||||||| | ||| |||||||| ||        |||||| |||||||  ||||| ||||||||||| ||||    
T  1760922 cccatcaaaataaatttgaccacctaaaacagactccaccacgaaacaaccgctgaaaaaatgatatctataaccattcatcgtcactactcactctaaa 1760823  T
Q  123 agaacgtccctctaaatcaaacatcctgtcctcatcactatagctaagccacattcgaaaat 184  Q
    | |||  ||||||| |||||||| ||||| ||||||||  |||||||||||||| |||||||    
T  1760822 ataacacccctctacatcaaacaccctgtactcatcaccctagctaagccacatccgaaaat 1760761  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 20572324 - 20572226
Alignment:
Q  84 cgatatcaataaccacccatcgccactactcactttaaaagaacgtccctctaaatcaaacatcctgtcctcatcactatagctaagccacattcgaaaa 183  Q
    ||||||| ||||||||| ||||||||||||||| | ||||||||  |||||||||| ||||   |  |||||||||||| |||||| ||| || ||||||    
T  20572324 cgatatccataaccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctcatcactaaagctaaaccatatccgaaaa 20572226  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 30966984 - 30967061
Alignment:
Q  90 caataaccacccatcgccactactcactttaaaagaacgtccctctaaatcaaacatcctgtcctcatcactatagct 167  Q
    ||||||||||||||||| |||||||||   |||| | |  |||||||||||||||| | ||| |||||||| ||||||    
T  30966984 caataaccacccatcgctactactcacccaaaaaaatcacccctctaaatcaaacaccatgttctcatcaccatagct 30967061  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 26602621 - 26602668
Alignment:
Q  29 aaaattaacttcaccacctaaaacagactcaatcacaaaacaaccact 76  Q
    ||||| ||| ||||||||||| ||||||||| ||||||||||||||||    
T  26602621 aaaataaacatcaccacctaacacagactcattcacaaaacaaccact 26602668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 46768492 - 46768455
Alignment:
Q  21 cacccaccaaaattaacttcaccacctaaaacagactc 58  Q
    |||||||||||||| || ||||||||||||||||||||    
T  46768492 cacccaccaaaattcacgtcaccacctaaaacagactc 46768455  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 15120370 - 15120414
Alignment:
Q  24 ccaccaaaattaacttcaccacctaaaacagactcaatcacaaaa 68  Q
    ||||||||||  || ||||||||||||||||||||| ||||||||    
T  15120370 ccaccaaaatacacatcaccacctaaaacagactcattcacaaaa 15120414  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 26045728 - 26045764
Alignment:
Q  21 cacccaccaaaattaacttcaccacctaaaacagact 57  Q
    |||||||||||||| || |||||||||||||||||||    
T  26045728 cacccaccaaaattcacgtcaccacctaaaacagact 26045764  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 12296412 - 12296336
Alignment:
Q  84 cgatatcaataaccacccatcgccactactcactttaaaagaacgtccctctaaatcaaacatcctgtcctcatcac 160  Q
    ||||||| ||||||||||||||||||||||||    |||| |||  |||||||||| |||||  | |||||||||||    
T  12296412 cgatatccataaccacccatcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcac 12296336  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 41231617 - 41231700
Alignment:
Q  92 ataaccacccatcgccactactcactttaaaagaacgtccctctaaatcaaacatcctgtcctcatcactatagctaagccacat 176  Q
    |||||||||||||||||||||||||  | ||| |||  |||||||| ||||||| ||||| | |||||| ||| || ||||||||    
T  41231617 ataaccacccatcgccactactcac-ctcaaataacacccctctaagtcaaacaacctgtgcacatcaccataactgagccacat 41231700  T

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