View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20992_low_4 (Length: 344)
Name: NF20992_low_4
Description: NF20992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20992_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 20581982 - 20582264
Alignment:
| Q |
19 |
gaatcagagacataaggttggtataagatgatccattctccatcaaactaaccttacacttttcactcatttcttttaccttcctcctaatctcatcact |
118 |
Q |
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| T |
20581982 |
gaatcagagacataaggttggtataagatgatccattctccatcaaactaaccttacacttttcactcatttcttttaccttcctcctaatctcatcact |
20582081 |
T |
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| Q |
119 |
attgttcatcaaggtactactaccattcttaacttcttctgccaacaccagatccccacccaccctataatccagcctaatctccaccgctaatcccaat |
218 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20582082 |
attgttcatcaaggtactaacaccattcttaacttcttctgccaacaccagatccccacccaccctataatccagcctaatctccactgctaatcccaat |
20582181 |
T |
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| Q |
219 |
tccctaacc-------atgcattaatttgttgctctgcatagaccggccacgtggcaattggcacaccaaaccacaaactctc |
294 |
Q |
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| T |
20582182 |
tccctaaccatctggaatgcattcatttgttgctctgcatagaccggccacgtggcaattggcacaccaaaccacaaactctc |
20582264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 39 - 294
Target Start/End: Original strand, 20562839 - 20563101
Alignment:
| Q |
39 |
gtataagatgatccattctccatcaaactaaccttacacttttcactcatttcttttaccttcctcctaatctcatcactattgttcatcaaggtactac |
138 |
Q |
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| T |
20562839 |
gtataagatgatccattatccatcaaagcaaatctacacttttcactcatttctttaaccttcctcctaatctcatgactattgttcatcaaggtagtta |
20562938 |
T |
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| Q |
139 |
taccattcttaacttcttctgccaacaccagatccccacccaccctataatccagcctaatctccaccgctaatcccaattccctaacc-------atgc |
231 |
Q |
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| T |
20562939 |
caccattcttgacttcttctgcctgcaccaaatccccacccaccctataatccaacctaatctccacggctagtcccgattccctaaccatctcgaatgc |
20563038 |
T |
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| Q |
232 |
attaatttgttgctctgcatagaccggccacgtggcaattggcacaccaaaccacaaactctc |
294 |
Q |
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||| ||||||||||| ||||| || |||||||||||||||||||||||| ||||||||||||| |
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| T |
20563039 |
attcatttgttgctccgcataaactggccacgtggcaattggcacaccataccacaaactctc |
20563101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 17781637 - 17781919
Alignment:
| Q |
19 |
gaatcagagacataaggttggtataagatgatccattctccatcaaactaaccttacacttttcactcatttcttttaccttcctcctaatctcatcact |
118 |
Q |
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||||||||||||||||||| |||||||| ||||| |||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
17781637 |
gaatcagagacataaggttagtataagacgatccgttctccatcaaagcaactctacacttttctctcatatcttttaccttcctcctaatctcatcact |
17781736 |
T |
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| Q |
119 |
attgttcatcaaggtactactaccattcttaacttcttctgccaacaccagatccccacccaccctataatccagcctaatctccaccgctaatcccaat |
218 |
Q |
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| T |
17781737 |
aaggttcatcaatgtacgaacaccattttcaacttcttctgcctgtaccaaatctccacccacacgataatccaacctaatctccactgctaatcccaat |
17781836 |
T |
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| Q |
219 |
tccctaaccat-------gcattaatttgttgctctgcatagaccggccacgtggcaattggcacaccaaaccacaaactctc |
294 |
Q |
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|| |||||||| || || ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
17781837 |
tctctaaccatttgaaacgcgttcatttgttgctctgcatacaccggccacgtagcaattggcacaccataccacaaactctc |
17781919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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