View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20992_low_5 (Length: 253)
Name: NF20992_low_5
Description: NF20992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20992_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 16833495 - 16833587
Alignment:
| Q |
143 |
aatgccgatgatttttcctctggtgagttcaatttccagcccttcaccagattcaaaaaatttcttgttactctgaagaccatggtagcatta |
235 |
Q |
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| T |
16833495 |
aatgccaacgatttttcctctggtgagttcaatttccagcccctcaccagattcaaaaaatttcttgttactctgaagaccatggtagcatta |
16833587 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 16833376 - 16833454
Alignment:
| Q |
24 |
gctttatttctcctcatcacattcccaaacccatctcatttttccatggcactcatttttccacaccattccagttcca |
102 |
Q |
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| T |
16833376 |
gctttatttctcctcatcacattcccaaacccatctcattcttccatcgcactcgtttttccacaccattccagttcca |
16833454 |
T |
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