View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20992_low_6 (Length: 229)

Name: NF20992_low_6
Description: NF20992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20992_low_6
NF20992_low_6
[»] chr8 (4 HSPs)
chr8 (15-215)||(1800374-1800574)
chr8 (17-218)||(1782596-1782797)
chr8 (35-212)||(1776188-1776365)
chr8 (60-214)||(1771599-1771753)
[»] chr3 (1 HSPs)
chr3 (17-218)||(25729903-25730104)
[»] chr1 (3 HSPs)
chr1 (34-121)||(19790012-19790098)
chr1 (70-109)||(41324595-41324634)
chr1 (70-109)||(47249688-47249727)
[»] chr5 (3 HSPs)
chr5 (19-112)||(1672778-1672871)
chr5 (46-110)||(4081431-4081495)
chr5 (50-121)||(21124751-21124822)
[»] chr2 (1 HSPs)
chr2 (46-109)||(4845155-4845218)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 1800374 - 1800574
Alignment:
Q  15 tcagtatttgcgagcaacttttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacctcaaca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1800374 tcagtatttgcgagcaacttttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaatcctttatcactttcacctcaaca 1800473  T
Q  115 tatggacgagtattctcaatcatccatatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaagactttaggcacccttccattcctat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1800474 tatggacgagtattctcaatcatccatatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaaggctttaggcacccttccattcctat 1800573  T
Q  215 g 215  Q
    |    
T  1800574 g 1800574  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 1782596 - 1782797
Alignment:
Q  17 agtatttgcgagcaacttttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacctcaacata 116  Q
    |||||||| ||||||  |||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  1782596 agtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacata 1782695  T
Q  117 tggacgagtattctcaatcatccatatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaagactttaggcacccttccattcctatgc 216  Q
    ||||| |||  ||||||| ||||||| ||| | ||||||| | |  | ||| ||| |||||||||| ||||||||||| || |||||||||||||| |||    
T  1782696 tggaccagttctctcaattatccataattgcatatcctctttgatgatattgtctcctttgctgataatgaagacttttggtacccttccattcctctgc 1782795  T
Q  217 tt 218  Q
    ||    
T  1782796 tt 1782797  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 1776188 - 1776365
Alignment:
Q  35 ttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacctcaacatatggacgagtattctcaat 134  Q
    ||||||| ||||||||||||||||  ||||| || ||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |||  |||||||    
T  1776188 ttagaatatgagaggtgagctttttaggtttggagaacataaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttctctcaat 1776287  T
Q  135 catccatatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaagactttaggcacccttccattcct 212  Q
     ||||||| ||| | ||||||| | |  ||| | ||| ||||   ||| ||||||||||| || ||||||||||||||    
T  1776288 tatccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccattcct 1776365  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 1771599 - 1771753
Alignment:
Q  60 tggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacctcaacatatggacgagtattctcaatcatccatatttgaaaatcctctgtc 159  Q
    ||||||||| ||||||||||||||||| ||| ||| |||||||| |||||   || |||||| | |  ||| ||||||||| |||||||||||||||||     
T  1771599 tggtttagacaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctcttaatcatccacatttgaaaatcctctgtt 1771698  T
Q  160 aacaaattatcttctttgctgatgatgaagactttaggcacccttccattcctat 214  Q
    | |||||||||   |||||| ||||| || | |||||| || |||||||| ||||    
T  1771699 atcaaattatcacttttgcttatgataaaaaatttaggtactcttccatttctat 1771753  T

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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 25730104 - 25729903
Alignment:
Q  17 agtatttgcgagcaacttttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacctcaacata 116  Q
    |||||||| ||||||  |||||||||||||||||||| |||| |||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  25730104 agtatttgtgagcaatctttagaatgtgagaggtgagtttttttggtttggagaacatgaccatatgatctgaaccatttatcactttcacctcaacata 25730005  T
Q  117 tggacgagtattctcaatcatccatatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaagactttaggcacccttccattcctatgc 216  Q
    ||||| ||||||| |||||| ||| |||||| |||||||||  |||||| | |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  25730004 tggaccagtattcccaatcacccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgtagactttaggcacccttccatacctatgc 25729905  T
Q  217 tt 218  Q
    ||    
T  25729904 tt 25729903  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 19790098 - 19790012
Alignment:
Q  34 tttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacctcaacatatggac 121  Q
    ||||| ||||||||| | || |||| |||||| || ||||||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  19790098 tttagtatgtgagagttaagttttt-tggtttggagaacatgaccatttgatctgaatcctttatcacattcacctcaacatatggac 19790012  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 41324595 - 41324634
Alignment:
Q  70 aacatgaccatgtgatctgaaccctttatcactttcacct 109  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  41324595 aacatgaccatgtgatctgaatcctttatcacattcacct 41324634  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 47249727 - 47249688
Alignment:
Q  70 aacatgaccatgtgatctgaaccctttatcactttcacct 109  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  47249727 aacatgaccatgtgatctgaatcctttatcacattcacct 47249688  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 1672778 - 1672871
Alignment:
Q  19 tatttgcgagcaacttttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacctcaa 112  Q
    |||||| ||||||  ||||| ||||||||||||||||||| |||||| || ||||||||||| ||||| ||| || ||||||| |||| |||||    
T  1672778 tatttgtgagcaatctttagtatgtgagaggtgagcttttttggtttggagaacatgaccatttgatccgaatccattatcacattcagctcaa 1672871  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 4081495 - 4081431
Alignment:
Q  46 gaggtgagcttttctggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacctc 110  Q
    ||||||||||||| | ||||||| |||||| |||||||||||||| || ||||||| ||||||||    
T  4081495 gaggtgagcttttttagtttagagaacatggccatgtgatctgaatccattatcacattcacctc 4081431  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 21124822 - 21124751
Alignment:
Q  50 tgagcttttctggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacctcaacatatggac 121  Q
    ||||||||| |||||| || ||||||||||| | ||||||| |||||||||| |||||||||| | ||||||    
T  21124822 tgagcttttttggtttggagaacatgaccattttatctgaatcctttatcacattcacctcaatacatggac 21124751  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 4845155 - 4845218
Alignment:
Q  46 gaggtgagcttttctggtttagaaaacatgaccatgtgatctgaaccctttatcactttcacct 109  Q
    ||||||||||||| || |||||  |||||||| |||||||||||| || ||||||| |||||||    
T  4845155 gaggtgagcttttttgctttagtgaacatgactatgtgatctgaatccattatcacattcacct 4845218  T

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