View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20993_low_2 (Length: 479)
Name: NF20993_low_2
Description: NF20993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20993_low_2 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 479
Target Start/End: Original strand, 7009876 - 7010335
Alignment:
| Q |
20 |
gaggttaatctatttacattgcaatcctttctttcttcctttttaatttagagtttaagtattatacaacgtcggcgaaaaacttttttacacatacaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7009876 |
gaggttaatctatttacattgcaatcctttctttcttcctttttaaattagagtttaagtattatacatcgtcggcgaaaaacttttttacacatacaac |
7009975 |
T |
|
| Q |
120 |
caatcagatttttcatgacgccgcttttttgtatatacttattcctaaaatatctcatgatgccactttatgccactttacatatacagtaaatatatag |
219 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7009976 |
caatcagatttttcatgacaccacttttttgtatatacttattcctaaaatatctcatgatgccactttatgccactttacatatatagtaaatatatag |
7010075 |
T |
|
| Q |
220 |
tctatgctatttttatagcattttgtagaatttggattgcatgtagtcagaaatcctctcattcactcagccagtacatcactggtcgttggaatttgat |
319 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
7010076 |
tctatgctatttttatagcattttgcagaatttggattgcatgtagtcggcaatcctctcattcactcagccggtacatcattggtcgttggaatttgat |
7010175 |
T |
|
| Q |
320 |
caggatccaacaactacatgatgtgtcggctcaatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacgagcgatgaattttgtacgg |
419 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7010176 |
caggatccaacaactacatgatgtgccggctcaatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacaagcgatgaattttgtacgg |
7010275 |
T |
|
| Q |
420 |
ttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtg |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7010276 |
ttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtg |
7010335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 211 - 479
Target Start/End: Original strand, 7006999 - 7007257
Alignment:
| Q |
211 |
aatatatagtctatgctatttttatagcattttgtagaatttggattgcatgtagtcagaaatcctctcattcactcagccagtacatcactggtcgttg |
310 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||| ||| ||||||||| || |||| | ||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
7006999 |
aatatatagtctatcatatttttattgctttttgtggaacttggattgcctgaagtcggtaatcctctcattcactcgatcggtacatcattggtcgttg |
7007098 |
T |
|
| Q |
311 |
gaatttgatcaggatccaacaactacatgatgtgtcggctcaatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacgagcgatgaat |
410 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| || ||| |||||||||||||||||||||| || | ||||||| |||||||| |||| |||||| |
|
|
| T |
7007099 |
gaatttgatatggatccaacaactgcatgatgtgccgactccgtgaatgcggagaatttctgacttcagataatccgaatttgtgtttcgagtgatgaag |
7007198 |
T |
|
| Q |
411 |
tttgtacggttgatgtgttaatttgttgtttgaattgttgtgttttatagaaaggatttgtctaccgtg |
479 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
7007199 |
tttgtagggttgatgtgttaatttgtt----------ttgtgttatatagaaaggatttgtctaccgtg |
7007257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 7006782 - 7006890
Alignment:
| Q |
20 |
gaggttaatctatttacattgcaatcctttctttcttcctttttaatttagagtttaagtattatacaacgtcggcgaaaaacttttttacacatacaac |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
7006782 |
gaggttaatctatttacattgcaa--ctttttttcttc-ttcttaatttagagtttaagtactatacactatcggtgaaaaacttttttacacatacaat |
7006878 |
T |
|
| Q |
120 |
caatcagatttt |
131 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
7006879 |
caattagatttt |
7006890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University