View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20993_low_6 (Length: 234)

Name: NF20993_low_6
Description: NF20993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20993_low_6
NF20993_low_6
[»] scaffold0793 (1 HSPs)
scaffold0793 (1-229)||(5268-5496)
[»] chr4 (2 HSPs)
chr4 (1-229)||(753318-753546)
chr4 (1-208)||(727310-727517)


Alignment Details
Target: scaffold0793 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5496 - 5268
Alignment:
Q  1 aggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5496 aggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgatatg 5397  T
Q  101 aatatgtacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggatga 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5396 aatatgcacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggatga 5297  T
Q  201 gcttccgctcttttgctttctctgctcct 229  Q
    |||||||||||||||||||||||| ||||    
T  5296 gcttccgctcttttgctttctctgatcct 5268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 753546 - 753318
Alignment:
Q  1 aggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  753546 aggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgatatg 753447  T
Q  101 aatatgtacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggatga 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  753446 aatatgcacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggatga 753347  T
Q  201 gcttccgctcttttgctttctctgctcct 229  Q
    |||||||||||||||||||||||| ||||    
T  753346 gcttccgctcttttgctttctctgatcct 753318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 727310 - 727517
Alignment:
Q  1 aggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  727310 aggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgatatg 727409  T
Q  101 aatatgtacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggatga 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  727410 aatatgcacaatttgaatccccatgtgttaaagtttcgatttttatttatggggttttatcaatttgtatgtgacggggaaggaatttatcattggatga 727509  T
Q  201 gcttccgc 208  Q
    ||||||||    
T  727510 gcttccgc 727517  T

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