View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20994_low_2 (Length: 400)
Name: NF20994_low_2
Description: NF20994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20994_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 81 - 400
Target Start/End: Original strand, 5549202 - 5549521
Alignment:
| Q |
81 |
tgaaccacacatatagtgggatcttgtgccagcgtggcagtggtagccaatcagtagctcgaggacattaaggtatcagaaaagaacataatttgtagaa |
180 |
Q |
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| T |
5549202 |
tgaaccaatcatatagtgggatcttgtgccagcgtggcagtggtagccaatcagtagctcgaggacattaaggtatcagaaaagaacatcatgtgtagaa |
5549301 |
T |
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| Q |
181 |
attaataaaagggtttcttaatatttaataattttgtagttattccaaaattagatatattattttagtactttattttatatcacatccaatcagattt |
280 |
Q |
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| T |
5549302 |
attaataaaagggtttcttaatattttataattttgtagatattccaaaattagatatattattttagtactttattttatatcacatccaatcagattt |
5549401 |
T |
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| Q |
281 |
tgacatgatgactgaagaatgagatcattggannnnnnnnnnnnnnaaacagttgtttttaaggttcagaaaattaccaagaaatatggatgatttgacc |
380 |
Q |
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| T |
5549402 |
tgacatgatgactgaagaatgagatcattggattttttttctttttaaacagttgtttttaaggttcagaaaattaccaagaaatatggatgatttgacc |
5549501 |
T |
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| Q |
381 |
atcaacagagacaagttttt |
400 |
Q |
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| T |
5549502 |
atcaacagagacaagttttt |
5549521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5549200 - 5549108
Alignment:
| Q |
1 |
ctatttctaggacaatatttggtttaaacccttttctcaatggttaatgccctaaggtctcattgaaatatccacctcgatgaaccacacata |
93 |
Q |
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| T |
5549200 |
ctatttctaggtcactatttggatcaaacccttttctcaatggttaatgccctaaggtctcattgaaataaccacctcgatgaaccccacata |
5549108 |
T |
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