View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20994_low_4 (Length: 244)
Name: NF20994_low_4
Description: NF20994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20994_low_4 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 28647445 - 28647686
Alignment:
| Q |
4 |
tagaattcaccacacattatacaattacactataacatatattctaattattaggtggactagtttagcttcttnnnnnnn----catacattaatcatt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
28647445 |
tagaattcaccacacattatgcaattacactataacatatatgctaactattaggtgggttagtttaacttcttaaaaaaaaaaacatacattaatcatt |
28647544 |
T |
|
| Q |
100 |
caccaactaacttgagcaaacgcgcaaggaagaaaagtcatcaagtctatcattactagaacttaacaatagaattaccaaagtctaacactaaattgat |
199 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28647545 |
caccaactaacttgagcaaacgc--aaggaagaaaag-catcaagtctatcattactagaacttaacaatagaattaccaaagtctaacactaaattgat |
28647641 |
T |
|
| Q |
200 |
tgctaacgtagcaatcataaatccaaaaatatgaataaaaacaca |
244 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28647642 |
tactaacgtagcaatcataaatccaaaaatatgaataaaaacaca |
28647686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 28638838 - 28638925
Alignment:
| Q |
124 |
caaggaagaaaa-gtcatcaagtctatcattactagaacttaacaatagaattaccaaagtc-taacactaaattgattgctaacgtag |
210 |
Q |
| |
|
|||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||| || || ||||||||||||| ||||||||| |
|
|
| T |
28638838 |
caaggaggaaaatgtcatcaagtctg-cattactagaacttaacaataaaattaccaaactcttagcactaaattgattactaacgtag |
28638925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University