View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20995_high_8 (Length: 415)
Name: NF20995_high_8
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 5 - 397
Target Start/End: Original strand, 8944579 - 8944971
Alignment:
| Q |
5 |
ttttactgggacgaaattgataataagtagtaaaatataaggatgtaaacgaaacgtgataacatgaaagtttgacagaaatatagatatgagtaatgtt |
104 |
Q |
| |
|
|||| ||| ||||||||||||| ||||| || |||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
8944579 |
ttttcctgagacgaaattgatactaagtggttaaatataaggatgtaagcgaaacgtgttaacgataaagtttgacagaaagatagatatgatcaatgtt |
8944678 |
T |
|
| Q |
105 |
tcaccgagcaagaggcgtatttgaaatattcataatctcatggaccatttgaaagcgcaataaattacatggataaatttggtggtttcctttgattata |
204 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |
|
|
| T |
8944679 |
tcaccgagtaagagacgtatttaaaatattcataatctcatggaccatttgaaagcgcaataaattacatggatacatttggtggtttcctttcattgta |
8944778 |
T |
|
| Q |
205 |
tctaattgagtttatgtttttgaagatgcagaaatgaaaagtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaa |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944779 |
tctaattgagtttatgtttttgacgatgcagaaatgaagagtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaa |
8944878 |
T |
|
| Q |
305 |
tttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatattcatctctaaattaacttggttagactc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
8944879 |
tttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaacgatattcatctctaaattaactttgttagactc |
8944971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 211 - 369
Target Start/End: Complemental strand, 8964430 - 8964272
Alignment:
| Q |
211 |
tgagtttatgtttttgaagatgcagaaatgaaaagtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaa |
310 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| || | | | |||| | |||||| ||| | ||||||||||||||| |||| ||||||||||| |
|
|
| T |
8964430 |
tgagtttatgttattgaagatgcagagatgaagagcttgaatggaatgtatttgcaaagaaaatatggttttctttcatctacagtttcatcaatttcat |
8964331 |
T |
|
| Q |
311 |
tttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
369 |
Q |
| |
|
|| | | |||||||||||||| ||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
8964330 |
ttgtactttctctatttttaatttgtaattcaacttttccaattagtggtaaacgatat |
8964272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 21685541 - 21685627
Alignment:
| Q |
283 |
ctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
369 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| | || ||||| | | ||||||||||||| ||| ||||||||| |||| |
|
|
| T |
21685541 |
ctttcatctctagttccatcaatttcactttttctgtctattttcttaatatataattcaacttttttaattggtggtaaacgatat |
21685627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University