View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20995_low_1 (Length: 756)
Name: NF20995_low_1
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 16 - 707
Target Start/End: Original strand, 46355700 - 46356393
Alignment:
| Q |
16 |
atccttcgaagaacaaactggtaaactgatttctaatgaaactaattttaaaggtttctagtcttcaaatccttgtccannnnnnnngtttcttttgcgg |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46355700 |
atcctttgaagaacaaactggtaaactgatttctaatgaaactaattttaaaggtttctagtcttcaaatccttgtccgttttttttgtttcttttgcgg |
46355799 |
T |
|
| Q |
116 |
catcgtnnnnnnnttgcatggatccaatgtgtagaacgagggaatcacacacattatttacaccaaatatacaaggtattggtttactggtccataaact |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46355800 |
catcgtaaaaaaattgcatggatccaatgtgtagaacgagggaatcacacacattatttacaccaaatatacaaggtattggtttactggtccataaact |
46355899 |
T |
|
| Q |
216 |
tgaagaataattcaggtgtgcatattaacgaaattggctttcaggacttctatttgcattgcaatgttacaagagtttaaatagagcacacacttgtgac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46355900 |
tgaagaataattcaggtgtgcatattaacgaaattggctttcaggacttctatttgcattgcaatgttacaagagtttaaatagagcacacactcgtgac |
46355999 |
T |
|
| Q |
316 |
tgcaacaacctttccatgcatcaatatcctttatctctactcgtcacgaagatgaatatgaacaactcctctaggtgatgatgcccatcaaaaagatgta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46356000 |
tgcaacaacctttccatgcatcaatatcctttatctctactcgtcacgaagatgaatatgaacaactcctctaggtgatgatgcccatcaaaaagatgta |
46356099 |
T |
|
| Q |
416 |
gatacttgtaataaactttctacgttaatgaaagcaaataatccaaacatctgctttcaactttgaaatagtgaatttggatacttctcgtggaaaatgt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46356100 |
gatacttgtaataaactttctacgttaatgaaagcaaataatccaaacatctgctttcaactttgaaatagtgaatttggatacttctcgtggaaaatgt |
46356199 |
T |
|
| Q |
516 |
tcccaagcagccttttgatccaaatcaatgtcgagaatctgcgtaaaaacctacaaggttactcaacatgtaaactttgtccccaaagaatattcctgtc |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46356200 |
tcccaagcagccttttgatccaaatcaatgtcgagaatctgcgtaaaaacctacaaggttactcaacatgtaaactttgtccccaaagaatattcctgtc |
46356299 |
T |
|
| Q |
616 |
ttata--tataagcagcgacataattaaatacaaacatatacaacgcaaaatgctcttactgtttccaagtgtggcatatcccattcacagaca |
707 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46356300 |
ttataactataagcagcgacataattaaatacaaacatatacaacgcaaaatgctcttactgtttccaagtgtggcatatcccattcacagaca |
46356393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 7176535 - 7176574
Alignment:
| Q |
443 |
atgaaagcaaataatccaaacatctgctttcaactttgaa |
482 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7176535 |
atgaaagcaaataatccaaacatctgttttcaactttgaa |
7176574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 702 - 738
Target Start/End: Original strand, 7176832 - 7176868
Alignment:
| Q |
702 |
cagacaggagagaagctcctatggcaactgttaagtt |
738 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7176832 |
cagacaggagagaagctcctatgacaactgttaagtt |
7176868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University