View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20995_low_11 (Length: 269)
Name: NF20995_low_11
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_low_11 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 101449 - 101699
Alignment:
| Q |
1 |
ttttcccatatcctacacttgcattgtcgttaaaaacaccggaacacacctcttgactacaatgtcaagaaaacttacaaagattgaatcagggctctga |
100 |
Q |
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| T |
101449 |
ttttcccatatcctacacttgcattgtcgttaaaaacaccggaacacacctcttgactacaatgtcaagaaaacttacaaagattgaatcagggctctga |
101548 |
T |
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| Q |
101 |
tatcatttattggagagtccatagaagcgttgagagcaacaacaaaccaatgattcatatccaccaaaagattatacaccacatctctaacaaaaccata |
200 |
Q |
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| T |
101549 |
tatcatttattggagagtctgtagaagcgttgagagcaacaacaaaccaatgattcatatccaccaaaagattatacgcctcatctccaacaaaaccata |
101648 |
T |
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| Q |
201 |
aaatattatttaatagatcacgagcaattcttgtgtggtcacaatactttg |
251 |
Q |
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| T |
101649 |
aaatattatttaatagatcacgagcaattcttgtgtggtcacaatactttg |
101699 |
T |
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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 25848804 - 25848635
Alignment:
| Q |
84 |
ttgaatcagggctctgatatcatttattggagagtccatagaagcgttgagagcaacaacaaaccaatgattcatatccaccaaaagattatacaccaca |
183 |
Q |
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| T |
25848804 |
ttgaatcaaagctctgatatcatttattgaagagttcatagaagcgtcaggagcaacaacaaaccaatgattcataaccaccaaaagattatacaccaca |
25848705 |
T |
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| Q |
184 |
tctctaa-caaaaccataaaatattattta-atagatcacgagcaattcttgtgtggtcacaatactttg |
251 |
Q |
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| T |
25848704 |
tctctaaccaaaaccataagatatcatttatatagattaggagcaattcttgtgtggtcacaatactttg |
25848635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 25848916 - 25848836
Alignment:
| Q |
9 |
tatcctacacttgcattgtcgttaaaaacaccggaacacacctcttgactacaatgtcaagaaaacttacaaagattgaat |
89 |
Q |
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||||||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25848916 |
tatcctatacttgcattgctgttaaaaacaacggaacacacctcttgactataatgtcaagaaaacttacaaagattgaat |
25848836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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