View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20995_low_12 (Length: 265)
Name: NF20995_low_12
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 45506339 - 45506576
Alignment:
| Q |
16 |
cattaagttcagaactgaacgttacttttgtaagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagtt |
115 |
Q |
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| T |
45506339 |
cattaagttcagaactgaacgttacttttgtaagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagtt |
45506438 |
T |
|
| Q |
116 |
gaattctaaatgataagctttgaccattgagatagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45506439 |
gaattctaaatgataagctttgaccattgagatagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatcc |
45506538 |
T |
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| Q |
216 |
ttttatccaaacttttgaaatctctccacctcccccta |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
45506539 |
ttttatccaaacttttgaaatctctccacctcccccta |
45506576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 45511807 - 45512036
Alignment:
| Q |
24 |
tcagaactgaacgttacttttgtaagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattcta |
123 |
Q |
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| T |
45511807 |
tcagaactgaacgttacttttgtaagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattcta |
45511906 |
T |
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| Q |
124 |
aatgataagctttgaccattgagatagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttatcc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45511907 |
aatgataagctttgaccattgagatagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttatcc |
45512006 |
T |
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| Q |
224 |
aaacttttgaaatctctccacctcccccta |
253 |
Q |
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| T |
45512007 |
aaacttttgaaatctctccacctcccccta |
45512036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 230
Target Start/End: Complemental strand, 38118347 - 38118164
Alignment:
| Q |
47 |
aagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattctaaatgataagctttgaccattgag |
146 |
Q |
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||||||| ||||||||||| | || ||| | ||||||||||||||||||||||| ||||| ||||||| | ||| || || | ||| |||||||| || |
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| T |
38118347 |
aagactgaccaaatctccaactagagggtaccacattaatagctgtacgagtctttccattactgagttggactctgaaggacaggctctgaccatttag |
38118248 |
T |
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| Q |
147 |
atagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttatccaaacttt |
230 |
Q |
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| T |
38118247 |
atagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaacttt |
38118164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 38166006 - 38165800
Alignment:
| Q |
24 |
tcagaactgaacgttacttttgtaagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattcta |
123 |
Q |
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|||||||||||| || || || ||||||| ||||||||||| | || ||| | ||||||| ||| || ||||||| ||||| ||||||| | ||| |
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| T |
38166006 |
tcagaactgaaccttgctgatgaaagactgaccaaatctccaactagagggtaccacattaacagccgtgagagtctttccattactgagttggactctg |
38165907 |
T |
|
| Q |
124 |
aatgataagctttgaccattgagatagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttatcc |
223 |
Q |
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|| || | || |||||||| |||||||||| ||||||||| |||||||||||||| ||||||| | |||||| || || |||| || ||||| |||| |
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| T |
38165906 |
aaggacagactctgaccatttagatagcttaagctttgccagttagcaccccaatttcttgacatagattcccagtttctcattttagaccctttgatcc |
38165807 |
T |
|
| Q |
224 |
aaacttt |
230 |
Q |
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||||||| |
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| T |
38165806 |
aaacttt |
38165800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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