View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20995_low_13 (Length: 245)

Name: NF20995_low_13
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20995_low_13
NF20995_low_13
[»] chr7 (3 HSPs)
chr7 (1-245)||(28990724-28990968)
chr7 (36-232)||(29001176-29001387)
chr7 (36-232)||(28977207-28977414)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 28990968 - 28990724
Alignment:
Q  1 aacaacactgagactgaaacatagagcgccttcaacctaacccttcaaatcaattttcctttcttcgatttctgcaaaaaatcgcttctcgattcaaacc 100  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28990968 aacaacactaagactgaaacatagagcgccttcaccgtaacccttcaaatcaattttcctttcttcgatttctgcaacaaatcgcttctcgattcaaacc 28990869  T
Q  101 taatactcaaacatctcttgtagcgtagatctgtacaaaaatcctcaaatttttctcaaattctcaaccctaccaaattcttttgggtgatcttgtagtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28990868 taatactcaaacatctcttgtagcgtagatctgtacaaaaatcctcaaatttttgtcaaattctcaaccctaccaaattcttttgggtgatcttgtagtt 28990769  T
Q  201 gtatcatacccttagaaatttcacatttttctcccaagatttcgt 245  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  28990768 gtatcatacccttagaaatttcacatttttcttccaagatttcgt 28990724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 29001387 - 29001176
Alignment:
Q  36 cctaacccttcaaatcaattttcctttcttcgatttctgcaaaaaatcgcttctcgattcaaa-cctaata--------------ctcaaacatctcttg 120  Q
    ||||||||||||||||||||||||| |||||||| ||| ||| |||||||| ||||||||||| ||||||               ||||||||| |||||    
T  29001387 cctaacccttcaaatcaattttcctctcttcgatctcttcaacaaatcgctcctcgattcaaaacctaatcatcaaaatcaaaccctcaaacatttcttg 29001288  T
Q  121 tagcgtagatctgtacaaaaatcctcaaatttttctcaaattctcaaccctaccaaattcttttgggtgatcttgtagttgtatcatacccttagaaatt 220  Q
    |||||||||||||||||||||||||||  ||||  ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  29001287 tagcgtagatctgtacaaaaatcctcactttttggtcaaattttcaaccctacccaatttttttgggtgatcttgtagttgtatcatacccttagaaatt 29001188  T
Q  221 tcacatttttct 232  Q
    ||||||||||||    
T  29001187 tcacatttttct 29001176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 28977414 - 28977207
Alignment:
Q  36 cctaacccttcaaatcaattttcctttcttcgatttctgcaaaaaatcgcttctcgattcaaacctaatactcaaa--------------catctcttgt 121  Q
    ||||||||||||||||||||||||| ||||||||| || ||| |||| |||| ||||||||||||||||  |||||              ||||||||||    
T  28977414 cctaacccttcaaatcaattttcctctcttcgatt-cttcaacaaattgcttttcgattcaaacctaatcatcaaaatcaaaccctcatacatctcttgt 28977316  T
Q  122 agcgtagatctgtacaaaaatcctcaaatttttctcaaattctcaaccctaccaaattcttttgggtgatcttgtagttgtatcatacccttagaaattt 221  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||||||| |||| ||||||||||  || |   | ||||||||  ||||||||||    
T  28977315 agcgtagatctgtacaaaaatcctcaattttcggtcaaattctcaaccctacccaatttttttgggtga--ttatcaatttatcatacttttagaaattt 28977218  T
Q  222 cacatttttct 232  Q
    |||||||||||    
T  28977217 cacatttttct 28977207  T

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