View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20995_low_14 (Length: 239)
Name: NF20995_low_14
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_low_14 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 10604055 - 10603853
Alignment:
| Q |
18 |
tgtaagtcctctcttactttcttgcttagtttgtctctctatttatctattaataccttttttgtggaactcctcaaacccttgtttttgtaatttttgt |
117 |
Q |
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| T |
10604055 |
tgtaagtcctctcttactttcttgcttagtttgtctctctatttatctattaatacattttttgtggaactcctcaaacccttgtttttgtaatttttgt |
10603956 |
T |
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| Q |
118 |
tgggaggtgcaccaaattcgtgtggatgttgcaagctacccagaatttcatagtttgcataaaaattatgtaactcagaaagctgtaccagtctctttca |
217 |
Q |
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| T |
10603955 |
agtgaggttcaccaaattcgtgtggatgttgcaagctacccagaat-------------------ttatgtaactcagaaagctgtaccagtctctatca |
10603875 |
T |
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| Q |
218 |
atgtatccggcgacctggattc |
239 |
Q |
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| T |
10603874 |
atgtatccggcgacctggattc |
10603853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 20982453 - 20982208
Alignment:
| Q |
18 |
tgtaagtcctctcttactttcttgcttagtttgtctctctatttatctattaatacctttttt--------gtggaactcctcaaacccttgtttttg-- |
107 |
Q |
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| T |
20982453 |
tgtaagtcctcacttactttcttgctttgtttgtctctctatttatccatcaatacctttttttttttgttgtggaactcctcaaacccttgtttttggt |
20982354 |
T |
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| Q |
108 |
--------taatttttgttgggaggtgcaccaaattcgtgtggatgttgcaagctacccagaatttcatagtttgcataaaaattatgtaactcagaaag |
199 |
Q |
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| T |
20982353 |
tcttttcataatttatgtagggaggtgcaccaaattcgtgtggatgttgcaagctacacagaattttgtagtttgcttttcaagtatgcaactcaggaag |
20982254 |
T |
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| Q |
200 |
------ctgtaccagtctctttcaatgtatccggcgacctggattc |
239 |
Q |
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| T |
20982253 |
ctgtatctgtatcagtctctttcaatgtatccaacgacgtggattc |
20982208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 55577157 - 55577199
Alignment:
| Q |
18 |
tgtaagtcctctcttactttcttgcttagtttgtctctctatt |
60 |
Q |
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| T |
55577157 |
tgtaagtcctctcttactttcttgcttattctgtctctctatt |
55577199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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