View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20995_low_15 (Length: 237)
Name: NF20995_low_15
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28990729 - 28990509
Alignment:
| Q |
1 |
tttcgttactttagtctttaatcgtaaccccatctttagaattcatcgacttacggggtttgagtatacttatcgtttcagtgattcagaagaaacccta |
100 |
Q |
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| T |
28990729 |
tttcgttactttagtctttaatcgtaaccccatcttgagaattcatcgacttacggggtttgagtatacttatcgtttcagcgattcagaagaaacccta |
28990630 |
T |
|
| Q |
101 |
ggtttgtagttgagtttagttaattgtacattctttttgggtagaaatttttcggatttgaaactttgaatcatgaacaataacaatagagggagatatc |
200 |
Q |
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| T |
28990629 |
ggtttgtagttgagtttagttaattgtacattctttttgggtagaaatttttcggatttgaaactttgaatcatgaacaataacaatagagggagatatc |
28990530 |
T |
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| Q |
201 |
cacctgggattgggttaggac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
28990529 |
cacctgggattgggttaggac |
28990509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28977199 - 28976979
Alignment:
| Q |
1 |
tttcgttactttagtctttaatcgtaaccccatctttagaattcatcgacttacggggtttgagtatacttatcgtttcagtgattcagaagaaacccta |
100 |
Q |
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|||||||| || ||||| |||| |||||||||| || |||||| || | ||||||| |||| ||||| ||||||||||| |||||||||||||| |||| |
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| T |
28977199 |
tttcgttagttcagtctctaattgtaaccccattttgagaattaatagttttacgggatttgggtatagttatcgtttcactgattcagaagaaaaccta |
28977100 |
T |
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| Q |
101 |
ggtttgtagttgagtttagttaattgtacattctttttgggtagaaatttttcggatttgaaactttgaatcatgaacaataacaatagagggagatatc |
200 |
Q |
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| T |
28977099 |
ggtttgtagttgagtttagtttattgtacattatttttgggttgaaattttttggatttgaaacttcgaatcatgaacaataacaatagagggagatatc |
28977000 |
T |
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| Q |
201 |
cacctgggattgggttaggac |
221 |
Q |
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| T |
28976999 |
cacctgggattgggttaggac |
28976979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 29001104 - 29000948
Alignment:
| Q |
65 |
tatacttatcgtttcagtgattcagaagaaaccctaggtttgtagttgagtttagttaattgtacattctttttgggtagaaatttttcggatttgaaac |
164 |
Q |
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|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
29001104 |
tatagttaccgtttcggtgattcagaagaaaccctaggtttgtagttgagtttagttgattgtacattctttttgggtagaatttttttggatttgaaac |
29001005 |
T |
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| Q |
165 |
tttgaatcatgaacaataacaatagagggagatatccacctgggattgggttaggac |
221 |
Q |
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| T |
29001004 |
tttgaatcatgaacaataacaatagagggagatatccacctgggattgggttaggac |
29000948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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