View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20995_low_16 (Length: 237)
Name: NF20995_low_16
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 49276592 - 49276784
Alignment:
| Q |
1 |
tgtggtttaggtaatcaacttcagaaacggaacgtgggcatttttgtttcggagtgcagattttggtctcttggagttccttagcttcgataagaatctt |
100 |
Q |
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| T |
49276592 |
tgtggtttaagtcatcaacttcagaaacggaacgtgggcatttttgtttcggagtgcagattttggtctcttggagttccttagcttcgataagaatctt |
49276691 |
T |
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| Q |
101 |
ctcagtcgtgatttgaattggagcatcggttttgttcttctccattgttggtcgaggaagcttccaccgtgtgtcttctctagggaaataact |
193 |
Q |
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| T |
49276692 |
ctcagttgtgatttgaattggagcatcggttttgttcttctccattgttggtcgaggaagcttccactgtgtgtcttctctagggaaataact |
49276784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 49280186 - 49280274
Alignment:
| Q |
71 |
ttggagttccttagcttcgataagaatcttctcagtcgtgatttgaattggagcatcggttttgttcttctccattgttggtcgaggaa |
159 |
Q |
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||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||| ||| || ||||||||||||||| |
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| T |
49280186 |
ttggagttccttatcttcgataagaatcagctcagttgtgatttgaattggtgcatcggttttgttgttcaccgttgttggtcgaggaa |
49280274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 16366227 - 16366255
Alignment:
| Q |
193 |
tgttgtatatttattgacatgtgaattat |
221 |
Q |
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| T |
16366227 |
tgttgtatatttattgacatgtgaattat |
16366255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 21189720 - 21189692
Alignment:
| Q |
193 |
tgttgtatatttattgacatgtgaattat |
221 |
Q |
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| T |
21189720 |
tgttgtatatttattgacatgtgaattat |
21189692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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