View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20995_low_17 (Length: 205)
Name: NF20995_low_17
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 28647669 - 28647835
Alignment:
| Q |
17 |
aatatgaataaaaacacagtcaaagattacatgcaatttgttcataagtcacaacttgaaaggtgatagtgcagaagctccaaacccgcttgccaagcga |
116 |
Q |
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| T |
28647669 |
aatatgaataaaaacacagtcaaagattgcatgcaatttgttcataa----caacttgaaaggtgatagtgcagaagctccaaacccgcttgccaaacga |
28647764 |
T |
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| Q |
117 |
tatttcaagtactctttcaaagatgtatctttgtatattggagggttttctttagataaaagttccttgat |
187 |
Q |
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| T |
28647765 |
tatttcaagtactctttcaaagatgtatctttgtatattggagggttttctttagataaaagttccttgat |
28647835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 28638943 - 28639093
Alignment:
| Q |
37 |
caaagattacatgcaatttgttcataagtcacaacttgaaaggtgatagtgcagaagctccaaacccgcttgccaagcgatatttcaagtactctttcaa |
136 |
Q |
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| T |
28638943 |
caaagattgcatgcaatttgttcataagtcacaacttgaaaggggatagtgcagaagctccaaaaccgcttgccaaacgatatttcaagtactctttcaa |
28639042 |
T |
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| Q |
137 |
agatgtatctttgtatattggagggttttctttagataaaagttccttgat |
187 |
Q |
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| T |
28639043 |
agaagtgtctttgtatattggtgggttttcttcagataaaagttccttgat |
28639093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 28669820 - 28669937
Alignment:
| Q |
67 |
acaacttgaaaggtgatagtgcagaagctccaaacccgcttgccaagcgatatttcaagtactctttcaaagatgtatctttgtatattggagggttttc |
166 |
Q |
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| T |
28669820 |
acaacttgaagggtgatagtgcagaagctccaaggccatttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtggattttc |
28669919 |
T |
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| Q |
167 |
tttagataaaagttcctt |
184 |
Q |
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| T |
28669920 |
tttagataacaattcctt |
28669937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 28672865 - 28673013
Alignment:
| Q |
39 |
aagattacatgcaatttgttcataagtcacaacttgaaaggtgatagtgcagaagctccaaacccgcttgccaagcgatatttcaagtactctttcaaag |
138 |
Q |
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|||||| |||||||||||||||||| ||||||| || | ||| ||||||||| ||||| ||| ||| || |||| | |||| |||||||||||| |
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| T |
28672865 |
aagattgcatgcaatttgttcataactcacaacctgttggttgaaagtgcagaaaatccaatgccgtttgtaaaacgatgtgccaagaactctttcaaag |
28672964 |
T |
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| Q |
139 |
atgtatctttgtatattggagggttttctttagataaaagttccttgat |
187 |
Q |
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| T |
28672965 |
aagtgtctctatatattggtagattttctttagataacagttccttgat |
28673013 |
T |
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