View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20995_low_3 (Length: 591)

Name: NF20995_low_3
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20995_low_3
NF20995_low_3
[»] chr5 (17 HSPs)
chr5 (1-413)||(39329537-39329947)
chr5 (462-571)||(39329996-39330105)
chr5 (218-294)||(2627771-2627848)
chr5 (51-131)||(12848333-12848413)
chr5 (216-277)||(34764495-34764555)
chr5 (218-277)||(7057376-7057435)
chr5 (218-277)||(39935983-39936042)
chr5 (220-278)||(31113690-31113748)
chr5 (221-282)||(26565191-26565252)
chr5 (49-102)||(41634543-41634596)
chr5 (218-277)||(8229522-8229581)
chr5 (218-295)||(36907001-36907077)
chr5 (1-44)||(41634408-41634451)
chr5 (49-123)||(7732382-7732456)
chr5 (2-52)||(42990701-42990751)
chr5 (213-274)||(13407016-13407077)
chr5 (218-313)||(7732574-7732669)
[»] chr7 (15 HSPs)
chr7 (49-126)||(47277905-47277982)
chr7 (49-129)||(31397068-31397148)
chr7 (218-296)||(9229309-9229387)
chr7 (218-278)||(25310706-25310766)
chr7 (218-278)||(40837306-40837366)
chr7 (61-129)||(44798075-44798143)
chr7 (218-277)||(48153262-48153321)
chr7 (218-278)||(43728293-43728353)
chr7 (218-277)||(43495582-43495641)
chr7 (241-300)||(46191935-46191994)
chr7 (1-44)||(47277155-47277198)
chr7 (216-277)||(44797886-44797947)
chr7 (218-278)||(42040154-42040213)
chr7 (1-49)||(46192335-46192383)
chr7 (218-266)||(48138805-48138853)
[»] chr8 (19 HSPs)
chr8 (49-129)||(37231940-37232020)
chr8 (49-129)||(2813651-2813731)
chr8 (49-129)||(14180233-14180311)
chr8 (69-129)||(9136609-9136669)
chr8 (218-277)||(23877194-23877253)
chr8 (1-52)||(37231792-37231843)
chr8 (218-277)||(17748499-17748558)
chr8 (218-277)||(31431022-31431081)
chr8 (49-103)||(11558842-11558896)
chr8 (220-286)||(11755401-11755467)
chr8 (218-309)||(2813429-2813521)
chr8 (1-52)||(9136783-9136834)
chr8 (218-277)||(11789072-11789130)
chr8 (218-277)||(12007077-12007136)
chr8 (1-52)||(14180064-14180115)
chr8 (218-277)||(32856250-32856308)
chr8 (224-278)||(24888464-24888518)
chr8 (224-278)||(25430394-25430448)
chr8 (79-131)||(39297585-39297637)
[»] chr2 (22 HSPs)
chr2 (213-277)||(36467505-36467569)
chr2 (221-278)||(7018195-7018252)
chr2 (49-129)||(36925697-36925776)
chr2 (49-129)||(44986553-44986633)
chr2 (49-122)||(3353278-3353351)
chr2 (49-129)||(45388910-45388990)
chr2 (218-277)||(40364042-40364101)
chr2 (218-292)||(26352961-26353035)
chr2 (218-296)||(38595746-38595824)
chr2 (219-299)||(14749645-14749725)
chr2 (218-277)||(30382505-30382564)
chr2 (49-124)||(36525847-36525922)
chr2 (220-278)||(17329087-17329145)
chr2 (217-286)||(8948347-8948416)
chr2 (218-286)||(11458169-11458236)
chr2 (53-97)||(18858636-18858680)
chr2 (1-52)||(36526008-36526059)
chr2 (218-293)||(36925885-36925959)
chr2 (218-277)||(40498854-40498912)
chr2 (2-52)||(43355793-43355843)
chr2 (218-282)||(5591077-5591141)
chr2 (218-278)||(13085183-13085243)
[»] chr1 (14 HSPs)
chr1 (49-129)||(2136952-2137032)
chr1 (49-129)||(29488406-29488488)
chr1 (218-296)||(50709816-50709894)
chr1 (218-307)||(22790817-22790906)
chr1 (218-277)||(11767475-11767534)
chr1 (218-298)||(31183818-31183899)
chr1 (49-129)||(31183611-31183691)
chr1 (218-277)||(4972768-4972827)
chr1 (218-293)||(17936118-17936193)
chr1 (218-295)||(46593964-46594041)
chr1 (218-278)||(10443800-10443860)
chr1 (218-278)||(30193732-30193792)
chr1 (65-113)||(50461109-50461157)
chr1 (49-103)||(51273210-51273264)
[»] chr3 (26 HSPs)
chr3 (49-129)||(31489400-31489480)
chr3 (218-294)||(43472053-43472129)
chr3 (213-277)||(52203680-52203744)
chr3 (216-278)||(27163790-27163852)
chr3 (49-129)||(21853850-21853930)
chr3 (217-277)||(38489565-38489625)
chr3 (49-129)||(47014512-47014592)
chr3 (218-277)||(45472830-45472889)
chr3 (218-296)||(51240645-51240723)
chr3 (218-278)||(52695291-52695351)
chr3 (218-296)||(2111721-2111800)
chr3 (1-52)||(24611515-24611566)
chr3 (49-131)||(21842701-21842783)
chr3 (218-296)||(36171903-36171981)
chr3 (218-299)||(12176447-12176528)
chr3 (49-126)||(24611339-24611416)
chr3 (216-277)||(36505051-36505112)
chr3 (241-277)||(17063820-17063856)
chr3 (220-275)||(20619651-20619706)
chr3 (218-296)||(21854054-21854133)
chr3 (218-277)||(21858549-21858608)
chr3 (218-285)||(35433585-35433652)
chr3 (49-131)||(21858342-21858424)
chr3 (225-277)||(21842915-21842967)
chr3 (218-262)||(24121416-24121460)
chr3 (225-277)||(47014725-47014777)
[»] chr4 (12 HSPs)
chr4 (218-277)||(40217930-40217989)
chr4 (50-129)||(44746576-44746655)
chr4 (218-285)||(34072711-34072778)
chr4 (218-292)||(4776120-4776194)
chr4 (218-296)||(38947560-38947638)
chr4 (218-278)||(47724575-47724635)
chr4 (218-269)||(53586619-53586670)
chr4 (223-276)||(42399349-42399402)
chr4 (217-277)||(22198567-22198627)
chr4 (218-277)||(6008436-6008495)
chr4 (1-52)||(22198927-22198978)
chr4 (218-257)||(45662034-45662073)
[»] chr6 (11 HSPs)
chr6 (218-294)||(8486307-8486383)
chr6 (220-282)||(12283467-12283529)
chr6 (225-293)||(211365-211433)
chr6 (218-277)||(2987959-2988018)
chr6 (216-278)||(30928614-30928676)
chr6 (220-277)||(12311793-12311850)
chr6 (60-131)||(6724351-6724422)
chr6 (49-121)||(12283608-12283680)
chr6 (49-102)||(212017-212070)
chr6 (222-277)||(7435056-7435112)
chr6 (218-278)||(17533143-17533203)
[»] scaffold0027 (1 HSPs)
scaffold0027 (218-277)||(8997-9056)
[»] scaffold0015 (1 HSPs)
scaffold0015 (218-278)||(38264-38324)
[»] scaffold0001 (1 HSPs)
scaffold0001 (49-101)||(394327-394379)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 39329537 - 39329947
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39329537 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgat 39329636  T
Q  101 atctaaatatatgaatgaaaatagaatataannnnnnnnnnnnnnnn----aaattgtgacctttacgattaaatagtaatgaagcgtaatcaatacnnn 196  Q
    |||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||       
T  39329637 atctaaatatatgaatgaaaatagaatataatttgttttttttttttttttaaattgtgacctttacgattaaatagtaatgaagcgtaatcaatacttt 39329736  T
Q  197 nnnncaagtatattcatacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 296  Q
        |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39329737 ttttcaagtatattcatacatat--aagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcttaaatttataaattttgtgtatccgc 39329834  T
Q  297 atatttgtatcatattggactagctaggtgtatactacgcacttatctttgttagatgttannnnnnnnnnnnnnnnnncacattatgctttcaataatg 396  Q
    |||| |||||||||||||||||||||||||||||||    |||||||||||||||||||||                  |||||||||||||||||||||    
T  39329835 atatctgtatcatattggactagctaggtgtatact----acttatctttgttagatgttatttttttggaatttttttcacattatgctttcaataatg 39329930  T
Q  397 caaattaaaaggtaacc 413  Q
    |||||||||||||||||    
T  39329931 caaattaaaaggtaacc 39329947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 462 - 571
Target Start/End: Original strand, 39329996 - 39330105
Alignment:
Q  462 ttctcatcacaaattatgcaagtcacaaagtctctcaattgtggcttagttaacctttgcctcaagtaacgccttgaatttcctaatcgtaattagcttt 561  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39329996 ttctcatcacaaattatgcaagtcacaaagtctctctattgtggcttagttaacctttgcctcaagtaacgccttgaatttcctaatcgtaattagcttt 39330095  T
Q  562 aggacccctt 571  Q
    ||||||||||    
T  39330096 aggacccctt 39330105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 2627848 - 2627771
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatcc 294  Q
    |||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||| |||| ||| |||||||||||    
T  2627848 atataagttttagtataaaatttttgttaacgtatcttaaccgtatcgtatcctaaattttaaaaaatttgtgtatcc 2627771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 12848413 - 12848333
Alignment:
Q  51 aacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 131  Q
    |||||||| ||||||||||||||| ||| ||||| |||| |||||||||| ||  ||||||||||| ||||||||||||||    
T  12848413 aacattaaacaaactttgttttgagttcctttattgatgtatttgttgatgtcctaatatatgaataaaaatagaatataa 12848333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 34764555 - 34764495
Alignment:
Q  216 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||    
T  34764555 atatataagttttagtataaaaat-ttgttaacgtatcttagacgtatcgtatcttaaattt 34764495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 7057376 - 7057435
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||| ||||||||||||| | ||| |||||||| ||| ||||||||||||||||||||    
T  7057376 atataaattttagtataaaatttttgctaacgtatcttaaccgtatcgtatcctaaattt 7057435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 39935983 - 39936042
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||| ||||||||||||||||  |||| ||||||| ||||| ||||||||||||||||||    
T  39935983 atatgagttttagtataaaaagtttgtcaacgtatcttagctgtatcgtatcctaaattt 39936042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 31113748 - 31113690
Alignment:
Q  220 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||||||||| | |||||||||||| |  | ||||||||||||||||||||    
T  31113748 ataagttttagtataaaatttttgttaacgtatctcggacgtatcgtatcctaaattta 31113690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 26565191 - 26565252
Alignment:
Q  221 taagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa 282  Q
    ||||||||||||| ||| | |||||||||||| ||| | |||||||||||||||||| ||||    
T  26565191 taagttttagtattaaatttttgttaacgtatcttaactgtatcgtatcctaaatttttaaa 26565252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 41634543 - 41634596
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatat 102  Q
    |||||||||| |||||||| |||| | ||||||||| |||||||||||||||||    
T  41634543 tcaacattaaacaaactttatttttagttcttttattgatgcatttgttgatat 41634596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 8229522 - 8229581
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||| ||||||  | || ||||||||| |||| |||||||||||||||||||    
T  8229522 atataagttttaatataaattttttattaacgtatcttagtcgtatcgtatcctaaattt 8229581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 36907001 - 36907077
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttat-aaattttgtgtatccg 295  Q
    |||||| ||||||||||||||  |||||||||||| ||||||||||  | |||||||||| | |||||| |||||||||    
T  36907001 atataaattttagtataaaaaatttgttaacgtatcttagccgtat--tgtcctaaatttttaaaatttcgtgtatccg 36907077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41634408 - 41634451
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtata 44  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||    
T  41634408 taaaaaggtgagattgtgttgtgaaaattcaatggagatgtata 41634451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 7732382 - 7732456
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaata 123  Q
    ||||||| || ||||||| ||||| | ||||||||| ||||||||| |||||||   || |||||||||||||||    
T  7732382 tcaacatgaaacaaacttcgttttaagttcttttattgatgcatttattgatattctaacatatgaatgaaaata 7732456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 42990701 - 42990751
Alignment:
Q  2 aaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 52  Q
    |||||| ||||| ||||| ||||||||| |||||||||||||| |||||||    
T  42990701 aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaa 42990751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 13407077 - 13407016
Alignment:
Q  213 tacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa 274  Q
    ||||||||||||| ||||||||||||  | ||| |||||| ||||| |||| ||||||||||    
T  13407077 tacatatataagtcttagtataaaaaattcgttgacgtatcttagctgtattgtatcctaaa 13407016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 7732574 - 7732669
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcct-aaatttataaattttgtgtatccgcatatttgtatcatattg 313  Q
    |||||| |||||||||||| || || ||||| ||| ||| |||||||||||||| || |||| |||||| |||||||| ||||   |||||||||||    
T  7732574 atataaattttagtataaatatttt-ttaacatatattaaccgtatcgtatcctgaattttaaaaatttcgtgtatccacatacccgtatcatattg 7732669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 47277905 - 47277982
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaa 126  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||| |||||||||||    
T  47277905 tcaacattaatcaaactttgttttgaattcttttattgaagcatttgttgatatcctaatatatgagtgaaaatagaa 47277982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 31397148 - 31397068
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||  || |||| ||| |||||| |||||    
T  31397148 tcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcccaacatataaataaaaataaaatat 31397068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 9229387 - 9229309
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 296  Q
    |||||| |||||||||||| |  |||||||||||| |||||||||||||||| ||| |||| |||||| | ||||||||    
T  9229387 atataaattttagtataaataatttgttaacgtatcttagccgtatcgtatcataattttaaaaatttcgcgtatccgc 9229309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 25310766 - 25310706
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||||||||| | | |||||||||||| ||| | |||||||||||||||||||    
T  25310766 atataagttttagtataatatttttgttaacgtatcttaactgtatcgtatcctaaattta 25310706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 40837306 - 40837366
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||||||||||  | ||||||| |||| ||| |||||||||||||||||||||    
T  40837306 atataagttttagtataaattttttgttaatgtatcttaaccgtatcgtatcctaaattta 40837366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 44798143 - 44798075
Alignment:
Q  61 aaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||||||| ||||||||| ||  ||||||||||||||  || ||||||||||||||| |||||    
T  44798143 aaactttgttttgagttcttttattgaaacatttgttgatatcctaacatatgaatgaaaatataatat 44798075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 48153262 - 48153321
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||| ||||||||||||| | |||||||| |||||| |||||||| ||||||||||||    
T  48153262 atataaattttagtataaaatttttgttaacatattttggccgtatcatatcctaaattt 48153321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 43728293 - 43728353
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    ||||||| |||||||||||||  |||| |||||||  |||||||||||||| |||||||||    
T  43728293 atataagatttagtataaaaaatttgtcaacgtatcctagccgtatcgtattctaaattta 43728353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 43495641 - 43495582
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||||||| | |||||||||||| ||| ||||||  |||| |||||||    
T  43495641 atataagttttagtataaaatttttgttaacgtatcttaaccgtattatatcttaaattt 43495582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 46191994 - 46191935
Alignment:
Q  241 ttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcatat 300  Q
    |||||||||||| ||||  |||| ||||||||| |||| |||||| ||||||||||||||    
T  46191994 ttgttaacgtatcttagttgtattgtatcctaattttaaaaatttcgtgtatccgcatat 46191935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47277155 - 47277198
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtata 44  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||    
T  47277155 taaaaaagtgagattgtgttgtgaaaattcaatagagatgtata 47277198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 44797947 - 44797886
Alignment:
Q  216 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||| |||||||| ||| || |||||||||||| ||||  |||| |||||||||||||    
T  44797947 atatataaattttagtagaaatattttgttaacgtatcttagatgtatggtatcctaaattt 44797886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 42040213 - 42040154
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||| ||||||  | ||||||||||||  || |||||||||||||||||||||    
T  42040213 atataagttttattataaattt-ttgttaacgtatcctaaccgtatcgtatcctaaattta 42040154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46192383 - 46192335
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagatt 49  Q
    ||||||||||||| ||||| ||||||||| |||| ||||||||| ||||    
T  46192383 taaaaaagtgagaatgtgttgtgaaaattcaatgaagatgtatatgatt 46192335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 48138805 - 48138853
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgt 266  Q
    |||||| |||||||||||| || ||||||| |||| |||||||||||||    
T  48138805 atataaattttagtataaatattttgttaatgtatcttagccgtatcgt 48138853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 37231940 - 37232020
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||  || |||| ||||||||||||||||    
T  37231940 tcaacattaaacaaactttgttttgagttcttttattgatgcatttgttgatatcctaacatataaatgaaaatagaatat 37232020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 2813731 - 2813651
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| ||||||||||||||| ||||||||| |||  |||||||||||||  || |||||||||||||||||||||    
T  2813731 tcaacattaaacaaactttgttttgagttcttttattgatatatttgttgatatcctaacatatgaatgaaaatagaatat 2813651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 14180233 - 14180311
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| |||||||||||  || ||||||||| ||||||||||||||||||  ||  ||||||||||||||||||||    
T  14180233 tcaacattaaacaaactttgtt--gagttcttttattgatgcatttgttgatatcctaacttatgaatgaaaatagaatat 14180311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 9136669 - 9136609
Alignment:
Q  69 ttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    ||||||||||| |||| ||||||||||||||||||  || |||||||||||||||||||||    
T  9136669 ttttgaattctcttattgatgcatttgttgatatcataacatatgaatgaaaatagaatat 9136609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 23877253 - 23877194
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||||| |||||||||  | |||||||||||| ||||||||||||||||||||||||    
T  23877253 atataagttgtagtataaattttttgttaacgtatcttagccgtatcgtatcctaaattt 23877194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37231792 - 37231843
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 52  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  37231792 taaaaaagtgagattgtgttgtgaaaattcaatggagatgtatacgattcaa 37231843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 17748558 - 17748499
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||||||  | |||||||| ||| |||||||||| |||||||||||||    
T  17748558 atataagttttagtataaattttttgttaacttatcttagccgtattgtatcctaaattt 17748499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 31431081 - 31431022
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||||||||||||| |||| || |||||||||||||| |||||| | ||||||||||    
T  31431081 atataagttttagtatacaaattttattaacgtattttagtcgtatcatctcctaaattt 31431022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 11558842 - 11558896
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatc 103  Q
    |||||||||| |||| |||||||||| ||||||||| | ||||||||||||||||    
T  11558842 tcaacattaaacaaattttgttttgatttcttttattgttgcatttgttgatatc 11558896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 11755467 - 11755401
Alignment:
Q  220 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt 286  Q
    |||||||||| ||||||||  |||||||||||| ||||| ||||| ||||||||||||  |||||||    
T  11755467 ataagttttaatataaaaaatttgttaacgtatcttagcagtatcatatcctaaattttaaaatttt 11755401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 2813521 - 2813429
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatccgcatatttgtatcat 309  Q
    |||||| ||||| |||||| || ||||||||  || ||||||||||||||||||||| |||| |||||| | |||||||| |||  |||||||    
T  2813521 atataaattttaatataaatattttgttaacacatcttagccgtatcgtatcctaaattttaaaaatttcgcgtatccgcgtatccgtatcat 2813429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9136834 - 9136783
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 52  Q
    ||||||||||||||||||| ||||||||| ||||||||  |||| |||||||    
T  9136834 taaaaaagtgagattgtgttgtgaaaattcaatggagacatatatgattcaa 9136783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 11789130 - 11789072
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||| ||||||| | ||||||||||||  || ||||||||||||||||||||    
T  11789130 atataagttttattataaaatt-ttgttaacgtatcctaaccgtatcgtatcctaaattt 11789072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 12007077 - 12007136
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||| ||| |||||||||  |||||||||||| ||||  ||||||||||||||||||    
T  12007077 atataagatttggtataaaaaatttgttaacgtatcttagttgtatcgtatcctaaattt 12007136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14180064 - 14180115
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 52  Q
    ||||||||||||| |||||  |||||||| |||||||||||||| |||||||    
T  14180064 taaaaaagtgagaatgtgttttgaaaattcaatggagatgtatatgattcaa 14180115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 32856250 - 32856308
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||||||||| |||||||  |||||||||||| |||| ||||||||||| |||||||    
T  32856250 atataagttttag-ataaaaaaattgttaacgtatcttagtcgtatcgtatcataaattt 32856308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 24888518 - 24888464
Alignment:
Q  224 gttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||||||  |||||||||||| |  | ||||||||||||||||||||    
T  24888518 gttttagtataaaaaatttgttaacgtatctcggtcgtatcgtatcctaaattta 24888464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 25430394 - 25430448
Alignment:
Q  224 gttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||||||  ||||||||||||||  | ||||||||||| ||||||||    
T  25430394 gttttagtataaaaaatttgttaacgtatttcggtcgtatcgtatcttaaattta 25430448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 39297637 - 39297585
Alignment:
Q  79 ttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 131  Q
    |||||| ||| ||||||||||||||  ||||||| |||||||||| |||||||    
T  39297637 ttttattgatacatttgttgatatcctaatatataaatgaaaataaaatataa 39297585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 36467505 - 36467569
Alignment:
Q  213 tacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36467505 tacatatatatattttagtataaaaattttgttaacgtattttagccgtatcgtatcctaaattt 36467569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 7018195 - 7018252
Alignment:
Q  221 taagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  7018195 taagttttagtataaaaattttgttaacgtatcttagccgtatcgtatcctaaattta 7018252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 36925697 - 36925776
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| ||||||||||||||| ||||||||| |||| |||||||||||||| || || ||||||||||||||||||    
T  36925697 tcaacattaaacaaactttgttttgagttcttttattgatgtatttgttgatatct-aacatgtgaatgaaaatagaatat 36925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 44986553 - 44986633
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| ||||||||||||||  ||||||||| ||||||||||||||||||| ||||||| | |||||||| |||||    
T  44986553 tcaacattaaacaaactttgttttgggttcttttattgatgcatttgttgatatcttaatatataagtgaaaatataatat 44986633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 3353278 - 3353351
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaat 122  Q
    |||||||||| ||||||||||||||| |||||||||  || ||||||||||||||  || ||||||||||||||    
T  3353278 tcaacattaaacaaactttgttttgagttcttttattcatacatttgttgatatcctaacatatgaatgaaaat 3353351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 45388910 - 45388990
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| || |||||||||| | ||||||||| |||||||||||| |||||  || ||||||||||||||| |||||    
T  45388910 tcaacattaaacatactttgttttaagttcttttattgatgcatttgttaatatcctaacatatgaatgaaaatataatat 45388990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 40364042 - 40364101
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||||||  | |||||||||||| |||| |||||||||||||||||||    
T  40364042 atataagttttagtataaattttttgttaacgtatcttagtcgtatcgtatcctaaattt 40364101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 26352961 - 26353035
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtat 292  Q
    |||||| |||||||||||| || |||||||||||| |||||||||| ||||||| |||||  |||||| ||||||    
T  26352961 atataaattttagtataaatattttgttaacgtatcttagccgtatggtatcctgaattttaaaatttcgtgtat 26353035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 38595824 - 38595746
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 296  Q
    |||| ||||||||||||||||| |||| || |||| ||| ||||||||||||||||||||| ||| || | ||||||||    
T  38595824 atatgagttttagtataaaaattttgtcaatgtatcttaaccgtatcgtatcctaaatttaaaaagttcgcgtatccgc 38595746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 14749645 - 14749725
Alignment:
Q  219 tataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcata 299  Q
    ||||| |||||||||||| |  || ||||||||| |||  ||||||||||||||| |||| |||||||| |||||||||||    
T  14749645 tataaattttagtataaataatttcttaacgtatcttactcgtatcgtatcctaattttaaaaattttgcgtatccgcata 14749725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 30382564 - 30382505
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||| ||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||||||    
T  30382564 atatgagttttaatataataattttgtcaacgtattttagccgtatcgtattctaaattt 30382505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 36525922 - 36525847
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatag 124  Q
    |||| ||||| |||| |||||||||| || |||||| ||||||||||||||  ||  |||||||||||||||||||    
T  36525922 tcaatattaaacaaattttgttttgagtttttttattgatgcatttgttgacgtcctaatatatgaatgaaaatag 36525847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 17329087 - 17329145
Alignment:
Q  220 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||||||||||  |||||||||||| |  || |||||||||||||||||||    
T  17329087 ataagttttagtataaaaaatttgttaacgtatctcggctgtatcgtatcctaaattta 17329145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 8948347 - 8948416
Alignment:
Q  217 tatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt 286  Q
    ||||||||||||||||||||  | |||||||||||| ||||  ||||| ||||||||||||  |||||||    
T  8948347 tatataagttttagtataaattttttgttaacgtatcttagttgtatcatatcctaaattttaaaatttt 8948416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 11458169 - 11458236
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt 286  Q
    ||||||||||| |||||||||  ||||||| ||||||||| ||||||||||| | ||||| ||||||||    
T  11458169 atataagtttttgtataaaaaaattgttaatgtattttagtcgtatcgtatcttcaattt-taaatttt 11458236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 18858636 - 18858680
Alignment:
Q  53 cattaatcaaactttgttttgaattcttttatcgatgcatttgtt 97  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||    
T  18858636 cattaaacaaactttgttttaaattcttttattgatgcatttgtt 18858680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36526059 - 36526008
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 52  Q
    ||||||||||||||||||| |||| |||| |||||||||||| | |||||||    
T  36526059 taaaaaagtgagattgtgttgtgagaattcaatggagatgtacatgattcaa 36526008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 36925885 - 36925959
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatc 293  Q
    |||||| |||||||||||| || || ||||||||| ||||||| || ||||||||||||||  ||||||| |||||    
T  36925885 atataaattttagtataaatattttattaacgtatcttagccg-attgtatcctaaatttaataattttgcgtatc 36925959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 40498854 - 40498912
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||||||  | || ||||||||| ||||| ||||||||||||||||||    
T  40498854 atataagttttagtataaatttttt-ttaacgtatcttagctgtatcgtatcctaaattt 40498912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 43355843 - 43355793
Alignment:
Q  2 aaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 52  Q
    |||||| ||||| ||||| ||||||||| |||||||||||||| |||||||    
T  43355843 aaaaaaatgagactgtgttgtgaaaattcaatggagatgtatatgattcaa 43355793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 5591077 - 5591141
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa 282  Q
    |||||||||||||||||||  | || ||||| ||| ||| ||| |||||||||||||||| ||||    
T  5591077 atataagttttagtataaattttttattaacatatcttaaccgcatcgtatcctaaatttttaaa 5591141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 13085183 - 13085243
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||| ||||||||  ||||||||  |  ||||| |||||||||||||||||||    
T  13085183 atataagttttattataaaaagtttgttaacccaagttagctgtatcgtatcctaaattta 13085243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 2136952 - 2137032
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    ||||||||||  ||||||||||||||||||||||||  |||||||||||||||||  || |||||||||||||||||||||    
T  2136952 tcaacattaaataaactttgttttgaattcttttattaatgcatttgttgatatcctaacatatgaatgaaaatagaatat 2137032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 29488406 - 29488488
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattctttt--atcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| ||||||||||||||| |||||||  || ||||||||||||||||||| || ||||||||||||||| |||||    
T  29488406 tcaacattaaacaaactttgttttgagttctttttaattgatgcatttgttgatatcttaacatatgaatgaaaataaaatat 29488488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 50709816 - 50709894
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 296  Q
    |||||| |||||||||||| || || ||||||||| |||||||||||||||||||| |||| |||||| ||||||||||    
T  50709816 atataaattttagtataaatattttattaacgtatcttagccgtatcgtatcctaattttaaaaatttcgtgtatccgc 50709894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 22790906 - 22790817
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcatatttgtatc 307  Q
    |||||| |||||||||||| || ||||||| |||| |||||| ||||||||||||| |||| |||||||| |||||||| |||| |||||    
T  22790906 atataaattttagtataaatattttgttaaagtatcttagccatatcgtatcctaattttaaaaattttgcgtatccgcgtattcgtatc 22790817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 11767534 - 11767475
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  11767534 atatatgttttagtataaaaattttgttaacgtatcttaaccgtatcgtatcctaaattt 11767475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 31183818 - 31183899
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatccgcat 298  Q
    |||||| |||||| ||||| || |||||||||||| ||||||||||||||||||||| |||| ||||||||  |||||||||    
T  31183818 atataaattttagaataaatattttgttaacgtatcttagccgtatcgtatcctaaattttaaaaattttgcatatccgcat 31183899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 31183611 - 31183691
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||| ||||| ||||||||||||||| ||||| ||| ||| ||||||||||||||  || ||||||| |||||||||||||    
T  31183611 tcaatattaaacaaactttgttttgagttcttctattgatacatttgttgatatcctaacatatgaaagaaaatagaatat 31183691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 4972827 - 4972768
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||||||||| ||||||||||||  |||  ||||||||||||||||||    
T  4972827 atataagttttagtataaaaattttgttaacgtatcctagttgtatcgtatcctaaattt 4972768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 17936193 - 17936118
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatc 293  Q
    |||||| |||||||||||| ||   |||||||||| ||||||||| |||||||||| |||| ||||||||||||||    
T  17936193 atataaattttagtataaatattaggttaacgtatcttagccgtaccgtatcctaattttaaaaattttgtgtatc 17936118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 46594041 - 46593964
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccg 295  Q
    |||||| |||||||||||| || |||||||||||| ||| | |||||||||||||| |||| |||||| | |||||||    
T  46594041 atataaattttagtataaatattttgttaacgtatcttaactgtatcgtatcctaattttaaaaatttcgcgtatccg 46593964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 10443800 - 10443860
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||||||| ||||| | |||||| |||  ||||||||||||||||||||||||    
T  10443800 atataagttttagtatgaaaatttcgttaacttatcatagccgtatcgtatcctaaattta 10443860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 30193732 - 30193792
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||| |||||||||||| || ||||||| |||| |||||| ||||||||||||| ||||    
T  30193732 atataaattttagtataaatattttgttaatgtatcttagccctatcgtatcctaatttta 30193792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 50461157 - 50461109
Alignment:
Q  65 tttgttttgaattcttttatcgatgcatttgttgatatctaaatatatg 113  Q
    |||||||||| ||||||||| ||||||||||||||||||  ||||||||    
T  50461157 tttgttttgagttcttttattgatgcatttgttgatatcctaatatatg 50461109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 51273210 - 51273264
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatc 103  Q
    |||| ||||| |||| |||||||||| ||||||||| |||||| |||||||||||    
T  51273210 tcaatattaaacaaattttgttttgagttcttttattgatgcagttgttgatatc 51273264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 31489480 - 31489400
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| |||| |||||||||| ||||||||| |||||||||| |||||||| || ||||||||||||||| |||||    
T  31489480 tcaacattaaacaaattttgttttgagttcttttattgatgcatttgctgatatcttaacatatgaatgaaaataaaatat 31489400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 43472053 - 43472129
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatcc 294  Q
    |||||| |||||||||||| || |||||||||||| |||||||||||||||||||| |||| |||||||| ||||||    
T  43472053 atataaattttagtataaatattttgttaacgtatcttagccgtatcgtatcctaattttaaaaattttgcgtatcc 43472129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 52203744 - 52203680
Alignment:
Q  213 tacatatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||    
T  52203744 tacatatataagttttagtataaaatttttgttaacgtatcttagccgaatcgtatcctaaattt 52203680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 27163852 - 27163790
Alignment:
Q  216 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||    
T  27163852 atatataagttttagtataaaatttttgttaacgtatcttagccgtatcgtatcttaaattta 27163790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 21853850 - 21853930
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    ||||||||||  ||| ||||||| || ||||||||| ||||||||||||||||||  || |||||||||||||||||||||    
T  21853850 tcaacattaaataaaatttgtttagagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatagaatat 21853930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 38489625 - 38489565
Alignment:
Q  217 tatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||    
T  38489625 tatataagttttagtataaattttttgttaacgtattttaaccgtatcgtatcctaaattt 38489565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 47014512 - 47014592
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    |||||||||| | ||||||||||| | ||||||||| ||||||||||||||||||  || |||||||||||||| ||||||    
T  47014512 tcaacattaaacgaactttgtttttagttcttttattgatgcatttgttgatatcctaacatatgaatgaaaatcgaatat 47014592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 45472830 - 45472889
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||| ||||||||| |||||||| ||| |||||| |||||||||||||||||    
T  45472830 atataagttttaatataaaaattttgttaacatatcttagccatatcgtatcctaaattt 45472889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 51240723 - 51240645
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 296  Q
    |||| ||||||||||||||||| |||| || |||| ||| ||||||||||||||||||||| ||| || | ||||||||    
T  51240723 atatgagttttagtataaaaattttgtcaatgtatcttaaccgtatcgtatcctaaatttaaaaagttcgcgtatccgc 51240645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 52695351 - 52695291
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||| ||||||||||| ||||| |||| ||||||||||||| |||||||||| ||||||||    
T  52695351 atatgagttttagtatcaaaattttgtcaacgtattttagctgtatcgtatcttaaattta 52695291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 2111721 - 2111800
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa-ttttgtgtatccgc 296  Q
    |||||| |||| ||||||| || ||||||| |||| |||||||||||||||||||| |||| ||| ||| ||||||||||    
T  2111721 atataaattttggtataaatattttgttaatgtatcttagccgtatcgtatcctaattttaaaaagtttcgtgtatccgc 2111800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24611566 - 24611515
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 52  Q
    ||||||||||||||||||| ||||||| | |||||||||||||| |||||||    
T  24611566 taaaaaagtgagattgtgttgtgaaaaatcaatggagatgtatatgattcaa 24611515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 21842701 - 21842783
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 131  Q
    ||||||||||  |||||||||||  | || |||||| |||| ||||||||||||| |||  |||||||||||||| |||||||    
T  21842701 tcaacattaaataaactttgtttatagtttttttattgatgtatttgttgatatccaaacttatgaatgaaaataaaatataa 21842783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 36171981 - 36171903
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 296  Q
    |||||| | |||||||||| |  ||||||| |||| |||||| ||||||||||||| |||| |||||||| ||||||||    
T  36171981 atataaatattagtataaataatttgttaaagtatcttagccatatcgtatcctaattttaaaaattttgcgtatccgc 36171903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 12176528 - 12176447
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgcata 299  Q
    |||||| |||||||| ||| |  |||||||||||| ||| |||||||||||||||| |||| |||||| | |||| ||||||    
T  12176528 atataaattttagtacaaataatttgttaacgtatcttaaccgtatcgtatcctaattttaaaaatttcgcgtattcgcata 12176447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 24611416 - 24611339
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaa 126  Q
    |||||||||| |||||||  |||||| ||||||||| || |||||||||||| |   ||||||||||| |||||||||    
T  24611416 tcaacattaaacaaacttgattttgagttcttttattgaagcatttgttgattttctaatatatgaataaaaatagaa 24611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 36505051 - 36505112
Alignment:
Q  216 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||||||||  | |||||||| ||| |||| |||||||||||||| ||||    
T  36505051 atatataagttttagtataaattttttgttaacatatcttagacgtatcgtatcctatattt 36505112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 17063856 - 17063820
Alignment:
Q  241 ttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17063856 ttgttaacgtatcttagccgtatcgtatcctaaattt 17063820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 20619651 - 20619706
Alignment:
Q  220 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaat 275  Q
    |||||||| |||| |||||  ||||||| ||||||||| |||||||||||||||||    
T  20619651 ataagtttcagtaaaaaaaaattgttaatgtattttagtcgtatcgtatcctaaat 20619706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 21854054 - 21854133
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaatttt-gtgtatccgc 296  Q
    |||||| ||||| |||||| || |||||| ||||| |||||| |||| ||||||||||||  ||||||| ||||||||||    
T  21854054 atataaattttactataaatattttgttatcgtatcttagccatatcatatcctaaattttaaaattttcgtgtatccgc 21854133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 21858549 - 21858608
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||| |||||||||||| || |||||||||||| ||| | |||||||||||| |||||    
T  21858549 atataaattttagtataaatattttgttaacgtatcttaactgtatcgtatcctgaattt 21858608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 35433585 - 35433652
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattt 285  Q
    |||||| |||||||||||| |  |||||||||||| |||  ||||||||||||||| |||| ||||||    
T  35433585 atataaattttagtataaataatttgttaacgtatcttaaacgtatcgtatcctaattttaaaaattt 35433652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 21858342 - 21858424
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatataa 131  Q
    ||||||||||  |||||||||||    || |||||| |||| | ||||||||||| |||  ||||||||||||||||||||||    
T  21858342 tcaacattaaataaactttgtttattgtttttttattgatgtagttgttgatatccaaacttatgaatgaaaatagaatataa 21858424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 21842915 - 21842967
Alignment:
Q  225 ttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||| || |||||||||||| ||||  |||||||||||| |||||    
T  21842915 ttttagtataaatattttgttaacgtatcttagttgtatcgtatcctgaattt 21842967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 24121416 - 24121460
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgta 262  Q
    |||||| |||||||||||| || |||||||||||| |||||||||    
T  24121416 atataaattttagtataaatattttgttaacgtatattagccgta 24121460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 47014725 - 47014777
Alignment:
Q  225 ttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||| |||| || |||||||||||||| | |||||||||||||| |||||    
T  47014725 ttttagtgtaaatattttgttaacgtatttgatccgtatcgtatccttaattt 47014777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 40217930 - 40217989
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  40217930 atataagttttagtataaatattttgttaacgtatcttagccgtatcgtatcctaaattt 40217989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 44746576 - 44746655
Alignment:
Q  50 caacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaatagaatat 129  Q
    ||||||||| ||||||||||||||| || |||||| ||||||||||||||||||  || ||||||||||||||| |||||    
T  44746576 caacattaaacaaactttgttttgagtttttttattgatgcatttgttgatatcctaagatatgaatgaaaataaaatat 44746655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 34072778 - 34072711
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattt 285  Q
    |||||| |||||||||||| || |||||||||||| |||||||||||||||||||  |||| ||||||    
T  34072778 atataaattttagtataaatattttgttaacgtatcttagccgtatcgtatcctagttttaaaaattt 34072711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 4776120 - 4776194
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtat 292  Q
    |||||||||||| ||||||||| || ||||||||||||||| | ||||||| ||||||||  |||||| ||||||    
T  4776120 atataagttttaatataaaaatattattaacgtattttagctgcatcgtattctaaattttaaaatttcgtgtat 4776194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 38947638 - 38947560
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatccgc 296  Q
    |||||| |||||||||||| || |||||||| ||| ||| |||||||||||||||| |||| ||||||||  |||||||    
T  38947638 atataaattttagtataaatattttgttaacatatcttaaccgtatcgtatcctaattttaaaaattttgcatatccgc 38947560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 47724635 - 47724575
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||| |||||||||||| |  |||||||||||| |||||||||||||||||||| ||||    
T  47724635 atataaattttagtataaataatttgttaacgtatattagccgtatcgtatcctaatttta 47724575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 53586619 - 53586670
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatc 269  Q
    |||||||||||||||||||  | |||||||||||| ||||||||||||||||    
T  53586619 atataagttttagtataaattttttgttaacgtatcttagccgtatcgtatc 53586670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 42399349 - 42399402
Alignment:
Q  223 agttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatt 276  Q
    ||||||||| ||||||| ||||| |||||| |||| ||||||||||||||||||    
T  42399349 agttttagtttaaaaattttgttgacgtatcttagtcgtatcgtatcctaaatt 42399402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 22198627 - 22198567
Alignment:
Q  217 tatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||||||| || ||||||||| || ||||||||||| | |||| |||||    
T  22198627 tatataagttttagtataaatattttgttaacgcatcttagccgtatcttgtcctgaattt 22198567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 6008436 - 6008495
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||| ||||||  | ||||| | |||| ||||||||||||||||||||||||    
T  6008436 atataagttttaatataaattttttgtttaagtatcttagccgtatcgtatcctaaattt 6008495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22198978 - 22198927
Alignment:
Q  1 taaaaaagtgagattgtgtcgtgaaaattaaatggagatgtataagattcaa 52  Q
    |||||||||||| |||||| || ||||||||||| ||||||||| |||||||    
T  22198978 taaaaaagtgaggttgtgttgtaaaaattaaatgaagatgtatatgattcaa 22198927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 45662034 - 45662073
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttag 257  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  45662034 atataagttttagtataaaaattttgttaacgtatcttag 45662073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 8486307 - 8486383
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaa-tttataaattttgtgtatcc 294  Q
    |||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||| |||| |||||||| ||||||    
T  8486307 atataagttttagtataaaaaa-ttgttatcgtatcttagccgtatcgtatcctaaattttaaaaattttgcgtatcc 8486383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 12283529 - 12283467
Alignment:
Q  220 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaa 282  Q
    |||||||||||||||||||  |||||| | ||||||||||||||| |||||||||||| ||||    
T  12283529 ataagttttagtataaaaactttgttagcatattttagccgtatcatatcctaaatttttaaa 12283467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 211433 - 211365
Alignment:
Q  225 ttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaatttataaattttgtgtatc 293  Q
    ||||||||| |||||   ||| |||||| |||||| ||| |||||||||||||||||||||||||||||    
T  211433 ttttagtattaaaattacgttcacgtatcttagccatattgtatcctaaatttataaattttgtgtatc 211365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 2988018 - 2987959
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    ||||||| ||||||||||   | |||||||||||| ||||||||||||||||||||||||    
T  2988018 atataaggtttagtataatgtttttgttaacgtatcttagccgtatcgtatcctaaattt 2987959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 30928614 - 30928676
Alignment:
Q  216 atatataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||||||||||||| | ||| |||| ||||||||| |||| ||||| ||||||||    
T  30928614 atatataagttttagtataaaatttttgataacctattttagctgtatagtatcataaattta 30928676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 12311850 - 12311793
Alignment:
Q  220 ataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||||||  || | ||||||||||||||||||  ||||||||||||    
T  12311850 ataagttttagtataaaaaaattttaaacgtattttagccgtattatatcctaaattt 12311793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 6724422 - 6724351
Alignment:
Q  60 caaactttgttttgaattcttttatcgatgcatttgttgatatcta-aatatatgaatgaaaatagaatataa 131  Q
    |||||||||| |||| ||||||||| |||||||||| ||||| ||| || ||| |||||||||||||||||||    
T  6724422 caaactttgtattgagttcttttattgatgcatttgctgata-ctataacatacgaatgaaaatagaatataa 6724351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 12283680 - 12283608
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatatctaaatatatgaatgaaaa 121  Q
    ||||||||||||||| ||||| |||||||||||||  ||||| | | ||||||||  || |||||||||||||    
T  12283680 tcaacattaatcaaaatttgtgttgaattcttttaatgatgcttctattgatatcccaacatatgaatgaaaa 12283608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 212070 - 212017
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgatat 102  Q
    |||||||||| ||||||||||||| | ||||||||| ||||  |||||||||||    
T  212070 tcaacattaaacaaactttgtttttagttcttttattgatgtgtttgttgatat 212017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 7435056 - 7435112
Alignment:
Q  222 aagttttagtataaaaatctt-gttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||||||| | || |||||||||| |||  |||||||||||||||||||    
T  7435056 aagttttagtataaaattttttgttaacgtatcttactcgtatcgtatcctaaattt 7435112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 17533203 - 17533143
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||| |||||||||||| || |||| ||||| | ||| |||||||||||||||| ||||    
T  17533203 atataaattttagtataaatattttgtcaacgtttcttaaccgtatcgtatcctaatttta 17533143  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 8997 - 9056
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattt 277  Q
    |||||||||||| ||||||||| ||||||| |||| ||| || |||||||||||||||||    
T  8997 atataagttttaatataaaaattttgttaatgtatattaaccttatcgtatcctaaattt 9056  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 38324 - 38264
Alignment:
Q  218 atataagttttagtataaaaatcttgttaacgtattttagccgtatcgtatcctaaattta 278  Q
    |||||||||||| ||||||||  |||||||||||| ||||||||||  |||||| ||||||    
T  38324 atataagttttaatataaaaaatttgttaacgtatcttagccgtattttatccttaattta 38264  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 394327 - 394379
Alignment:
Q  49 tcaacattaatcaaactttgttttgaattcttttatcgatgcatttgttgata 101  Q
    |||||||||| |||| |||||||||| ||||| ||| ||| ||||||||||||    
T  394327 tcaacattaaacaaattttgttttgagttcttgtattgatccatttgttgata 394379  T

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