View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20995_low_7 (Length: 420)
Name: NF20995_low_7
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 14552749 - 14552361
Alignment:
| Q |
18 |
aaaattttccatcatagaaaattgcatattctcagatggtttccaatgacgttttctttgattaataaaccaattgttaatttgcttctggtctaaccct |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14552749 |
aaaattttccatcatagaaaactgcatattctcagatggtttccaatgacgttttctttgattaataaaccaattgttaatttgcttctggtctaaccct |
14552650 |
T |
|
| Q |
118 |
gttgacttagccagttcaatcttatcagcttcctgcataatcatgtnnnnnnntttctttgttagttttgaatgattattattagtataaagtttagtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14552649 |
gttgacttagccagttcaatcttatcagcttcctgcataatcatgtaaaaaaatttatttgttagttttgaattattattattagtataaagtttagtaa |
14552550 |
T |
|
| Q |
218 |
atgggtgatgaaaaatttaccgttgggtaaggccatttgtagtgaacattccaccattgaagtagggtttgtcttgcttcttttggaagcttacccttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14552549 |
atgggtgatgaaaaatttaccgttgggtaaggccatttgtagtgaacattccaccattgaagtagggtttgtcttgcttcttttggaagcttacccttct |
14552450 |
T |
|
| Q |
318 |
ttttcttctttgaaaactccaatttcaaagtaccaatgtgacttccaaatttgcgtaaaagcctatctttgagctcacgatcttctccc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14552449 |
ttttcttctttgaaaactccaatttcaaagtaccaatgtgacttccaaatttgcgtaaaagcctatctttgagctcacgatcttctccc |
14552361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 37096868 - 37096948
Alignment:
| Q |
25 |
tccatcatagaaaattgcatattctcagatggtttccaatgacgttttctttgattaataaaccaattgttaatttgcttc |
105 |
Q |
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| T |
37096868 |
tccatcacagcaaattgcatatcctcagaaggcttccagtgacgttttctctgattaatgaaccaattgttgatctgcttc |
37096948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 18970263 - 18970391
Alignment:
| Q |
33 |
agaaaattgcatattctcagatggtttccaatgacgttttctttgattaataaaccaattgttaatttgcttctggtctaaccctgttgacttagccagt |
132 |
Q |
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|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||| |
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| T |
18970263 |
agaaaactgcatattctcctatggtttccaatgacattttctttgattaataaaccaattgttaatttgcttttggtctagccttgttgacttggccagt |
18970362 |
T |
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| Q |
133 |
tcaatcttatcagcttcctgcataatcat |
161 |
Q |
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| T |
18970363 |
tcaatcttataagcttactcgataatcat |
18970391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 17874660 - 17874788
Alignment:
| Q |
33 |
agaaaattgcatattctcagatggtttccaatgacgttttctttgattaataaaccaattgttaatttgcttctggtctaaccctgttgacttagccagt |
132 |
Q |
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|||||| |||| |||| |||||||| || ||||||||| ||||||||||||| || |||||||| |||||||||||||| |||| |||||| |||||| |
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| T |
17874660 |
agaaaactgcagattcatagatggtt-ccgatgacgtttcctttgattaataatccgattgttaacttgcttctggtctagccctattgactgtgccagt |
17874758 |
T |
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| Q |
133 |
tcaatcttatcagcttcctgcataatcatg |
162 |
Q |
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|||||||||||||||||||||| ||||||| |
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| T |
17874759 |
tcaatcttatcagcttcctgcaaaatcatg |
17874788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 2483508 - 2483438
Alignment:
| Q |
79 |
ttaataaaccaattgttaatttgcttctggtctaaccctgttgacttagccagttcaatcttatcagcttc |
149 |
Q |
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|||||||||||||||||||||||||||||| || ||| ||||| |||| ||||||||||||||||||||| |
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| T |
2483508 |
ttaataaaccaattgttaatttgcttctggattagcccagttgaattagtcagttcaatcttatcagcttc |
2483438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 697456 - 697387
Alignment:
| Q |
79 |
ttaataaaccaattgttaatttgcttctggtctaaccctgttgacttagccagttcaatcttatcagctt |
148 |
Q |
| |
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||||||||||| |||||||||||||| ||| |||| |||||||||| |||||||||||||||||||| |
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| T |
697456 |
ttaataaaccagttgttaatttgcttttggattaactctgttgacttgagcagttcaatcttatcagctt |
697387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 8791925 - 8791974
Alignment:
| Q |
58 |
ttccaatgacgttttctttgattaataaaccaattgttaatttgcttctg |
107 |
Q |
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||||| || ||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
8791925 |
ttccagtgccgtttcctttgattaataaaccagttgtttatttgcttctg |
8791974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 8238141 - 8238097
Alignment:
| Q |
114 |
ccctgttgacttagccagttcaatcttatcagcttcctgcataat |
158 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
8238141 |
ccctgttgacttagccagttcaatcttataagcttcctggataat |
8238097 |
T |
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