View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20995_low_9 (Length: 300)
Name: NF20995_low_9
Description: NF20995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20995_low_9 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 10603527 - 10603812
Alignment:
| Q |
13 |
aatattctagaattctaaatcattgttgaggagaatctgcaatggaatccaagggtatcaaaaatggatgtagcccaacatatattttataaattccgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10603527 |
aatattctagaattctaaatcattgttgaggagaatgtgcaatggaatccaagggtatcaaaaatggatgtagcccaacatat--tttataaattccgat |
10603624 |
T |
|
| Q |
113 |
atctcagcatatagtttattaatctcaggactgccgtcctttggcggtagacagatcctgggactccaaaaacgacccataaccccgtaaacctttttta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10603625 |
atctcagcatatagtttattaatctcaggactgccgtcatttggcggtagacagatcctgggactccaaaaacgacccataaccccgtaaacctttttta |
10603724 |
T |
|
| Q |
213 |
tctcctctagggtgcgacattcaatctccggtttcgggctgtgatctcttggacgttcaattttgtcacgtcgaaactcctttgagtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10603725 |
tctcctctagggtgcgacattcaatcttcggttttgggctgtgatctcttggacgttcaattttgtcacgtcgaaactcctttgagtt |
10603812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 20982040 - 20982167
Alignment:
| Q |
176 |
ctccaaaaacgacccataaccccgtaaaccttttttatctcctctagggtgcgacattcaatctccggtttcgggctgtgatc---tcttggacgttcaa |
272 |
Q |
| |
|
|||||| ||||||| ||| || || ||| |||||||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
20982040 |
ctccaataacgaccaatagccatgttaacattttttatctcctctagggtataacattcaatcatcggtcctgggctgtgatcgggtcttggacgttcaa |
20982139 |
T |
|
| Q |
273 |
ttttgtcacgtcgaaactcctttgagtt |
300 |
Q |
| |
|
|||||||||||||| ||| |||||||| |
|
|
| T |
20982140 |
ttttgtcacgtcgagtctcttttgagtt |
20982167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 20210511 - 20210539
Alignment:
| Q |
13 |
aatattctagaattctaaatcattgttga |
41 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20210511 |
aatattctagaattctaaatcattgttga |
20210539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University