View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_1 (Length: 894)
Name: NF20996_low_1
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 378 - 873
Target Start/End: Original strand, 2161590 - 2162078
Alignment:
| Q |
378 |
tataaagtaatgtcacctcataattccaaaacactaaaattgtttgttgcatggataaaacaaacaattttattgaaatagacacattcaagcacaaggt |
477 |
Q |
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| T |
2161590 |
tataaagtaatgtgacctcataattccaaaacactaaacttgtttgttgcatggataaaacaaacaattttattgaaatagacacattcaagcacaaggt |
2161689 |
T |
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| Q |
478 |
gtgcaagaatatgagtactcatatgcttcttgcattaagaagacgtgaataatatttgccgtgtaaaaaataaaagaaatactaactagattctaaattt |
577 |
Q |
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| T |
2161690 |
gtgcaagaatattagtactcatatgcttcttgcattaagaagacgtgaataacatttcccgtgtaaaaaatagaagaaatactaactagattctaaattt |
2161789 |
T |
|
| Q |
578 |
caaaagctagataccctaccaagctagatgtaattctagataccctatcaagctagaaggcaaaattatgacttgaaatcaagcactatgcttctaacag |
677 |
Q |
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| T |
2161790 |
caaaagctagataccctaccaagctagatgtaattctagataccctatcaagctag-------aattatgacttgaaatcaagcactatgcttctaacag |
2161882 |
T |
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| Q |
678 |
cgtaacctagcaataagatgcaaataactgctatcaatttctggattccatgcgagaatctaatctcttccgaatagatcacttcccaatgcactatgaa |
777 |
Q |
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| T |
2161883 |
cgtaacctagcaataagatgcaaatagctgttatcaatttctggattccatgcgagaatctaatctcttccgaatagatcacttcccaatgcactatgaa |
2161982 |
T |
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| Q |
778 |
aacccnnnnnnntacgtaaaaccaagtgatcgaaataacgatagtagcagtcttcgaaacaagaatcacttctataaatgatattgcagttgatag |
873 |
Q |
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| T |
2161983 |
aacccaacaaaatacgtggaaccaagtgatcgaaataacgatagtagcagtcgtcgaaacaagaatcacttctataaatgatattgcacttgatag |
2162078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 2161155 - 2161336
Alignment:
| Q |
62 |
tttcatgttcacactttatttttgccgtgacataaataaaatggcggataaatcttcaatttgttatctctaaaatacacacaacgcataggcacaaggc |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
2161155 |
tttcatgttcacactttatttttgccgtgacataaataaaatggtggataaatcttcaatttgttccctctaaaatacacacaacacataggcacaaggc |
2161254 |
T |
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| Q |
162 |
tatgcaattatattgtaaagctttatgttaattgaatttgcaaggttgactcaattaaaatatttgtaaaacagatcgaaat |
243 |
Q |
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| T |
2161255 |
tatgcaattatattttaaagctttatgttaattgaatttgcaaggttgactcaattaaaatatttgtaaaacagatcgaaat |
2161336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 797 - 873
Target Start/End: Original strand, 2164215 - 2164291
Alignment:
| Q |
797 |
aaccaagtgatcgaaataacgatagtagcagtcttcgaaacaagaatcacttctataaatgatattgcagttgatag |
873 |
Q |
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| T |
2164215 |
aaccaagtgatcgaaataacgatagtagcggtcttcgaaacaagaatcacttctgtaattgatattgcagttgatag |
2164291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 2161329 - 2161385
Alignment:
| Q |
261 |
atcgaaatgttcgttattaacacaatcataaacgatttaaggattgatatattaaaa |
317 |
Q |
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| T |
2161329 |
atcgaaatgttcgttgttaacacaatcataaacgatttaaggattgatatattaaaa |
2161385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 2161159 - 2161113
Alignment:
| Q |
19 |
tgaaaagaataacaaacaagttagatcagccttgtctaaggtatttc |
65 |
Q |
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| T |
2161159 |
tgaaaagaataacaaacaagttagatcagccttgtctaaggtatttc |
2161113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 832 - 873
Target Start/End: Original strand, 2181621 - 2181662
Alignment:
| Q |
832 |
cgaaacaagaatcacttctataaatgatattgcagttgatag |
873 |
Q |
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| T |
2181621 |
cgaaacaagactcacttctataaacgatattgcagttgatag |
2181662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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