View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_10 (Length: 242)
Name: NF20996_low_10
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3838088 - 3837850
Alignment:
| Q |
1 |
agttatagataaattaataaagattagagagtaaat-----atttaataagtttctcacttgaaactttgattttcagatgctattttgaagctggagga |
95 |
Q |
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| T |
3838088 |
agttatagacaaattaataaagattagagattaaatggataatttaataagtttctcacttgaaactttgattttcagatgctattttgaagctggagga |
3837989 |
T |
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| Q |
96 |
agctctttttctggaaccctatcatcatgaggctctttggtacctgggaaatgcttgccgtaccttggcatctagcggtgacc---------gggataat |
186 |
Q |
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| T |
3837988 |
agctctttttctggaaccctatcatcatgaggctttttggtacctgggatattcttgccgtaacttggcatctagcagtgaccctgacgaaatggattat |
3837889 |
T |
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| Q |
187 |
aatgctaagaaggcagctatgtgctatcaacgagctttt |
225 |
Q |
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| T |
3837888 |
tatgctaagaaggcagctatgtgctatcaacgagctttt |
3837850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 3831874 - 3831779
Alignment:
| Q |
37 |
atttaataagtttctcacttgaaactttgattttcagatgctattttgaagctggaggaagctctttttctggaaccctatcatcatgaggctcttt |
133 |
Q |
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|||||| ||||||||||||||||| ||| |||| ||||| |||||| ||||||||||| ||| |||||||||| ||||| |||||||||||||||| |
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| T |
3831874 |
atttaacaagtttctcacttgaaaatttactttt-agatgttattttaaagctggaggaggctgtttttctggatccctaccatcatgaggctcttt |
3831779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 8587554 - 8587452
Alignment:
| Q |
47 |
tttctcacttgaaactttgattttcagatgctattttgaagctggaggaagctctttttctggaaccctatcatcatgaggctctttggtacctgggaaa |
146 |
Q |
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| T |
8587554 |
tttctcacttgaaa-tttggttttcagatgctatttcgaagctggaggaggctctttctgtgaatcccaacaagcatgacgctctttggtgcctgggaaa |
8587456 |
T |
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| Q |
147 |
tgct |
150 |
Q |
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|||| |
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| T |
8587455 |
tgct |
8587452 |
T |
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