View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_11 (Length: 239)
Name: NF20996_low_11
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 52054320 - 52054132
Alignment:
| Q |
19 |
tctatgtcgtgtgaatactttgaggtgactaccgaaggtcaaatactctaattatacgatgaattgtttaacaacaatgactaagtagttaagacatgtg |
118 |
Q |
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| T |
52054320 |
tctatgtcgtgtgaatactttgaggtgactaccgaaggtcaaatactctaattatacgacgaattgtttaacaacaatgacttagtagttaagacatgtg |
52054221 |
T |
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| Q |
119 |
accaacacgccgcatcaccacccaaaactttaaaacattaatcatatcaataacatcttttttatatatttcattttgtctatttcaat |
207 |
Q |
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| T |
52054220 |
accaacatgccgcatcatcacccaaaactttaaaacattaatcatatcaatcacatcttttttatatatttaattttgtctatttcaat |
52054132 |
T |
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