View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_12 (Length: 236)
Name: NF20996_low_12
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 2161893 - 2162078
Alignment:
| Q |
30 |
caataagatgcaaataactgctatcaatttctggattccatgcgagaatctaatctcttccgaatagatcacttcccaatgcactatgaaaacccnnnnn |
129 |
Q |
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| T |
2161893 |
caataagatgcaaatagctgttatcaatttctggattccatgcgagaatctaatctcttccgaatagatcacttcccaatgcactatgaaaacccaacaa |
2161992 |
T |
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| Q |
130 |
nntacgtaaaaccaagtgatcgaaataacgatagtagcagtcttcgaaacaagaatcacttctataaatgatattgcagttgatag |
215 |
Q |
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| T |
2161993 |
aatacgtggaaccaagtgatcgaaataacgatagtagcagtcgtcgaaacaagaatcacttctataaatgatattgcacttgatag |
2162078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 2164215 - 2164291
Alignment:
| Q |
139 |
aaccaagtgatcgaaataacgatagtagcagtcttcgaaacaagaatcacttctataaatgatattgcagttgatag |
215 |
Q |
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| T |
2164215 |
aaccaagtgatcgaaataacgatagtagcggtcttcgaaacaagaatcacttctgtaattgatattgcagttgatag |
2164291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 2181621 - 2181662
Alignment:
| Q |
174 |
cgaaacaagaatcacttctataaatgatattgcagttgatag |
215 |
Q |
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| T |
2181621 |
cgaaacaagactcacttctataaacgatattgcagttgatag |
2181662 |
T |
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