View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_13 (Length: 233)
Name: NF20996_low_13
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 27210883 - 27210804
Alignment:
| Q |
90 |
tcagcggcattaggatgaagagttttcccatctggtccaataacaacgaaggaggggagttttgatagctcaaagtactt |
169 |
Q |
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| T |
27210883 |
tcagcggcattaggatgaagagttttcccatctggcccaataacaacaaaggaggggagtgttgatagctcaaagtactt |
27210804 |
T |
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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 27195642 - 27195554
Alignment:
| Q |
89 |
ctcagcggcattaggatgaagagttttcccatctggtccaataacaacgaaggaggggagttttgatagctcaaagtacttgattaatt |
177 |
Q |
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| T |
27195642 |
ctcagcggcattaggatgaagagttttcccatctggcccaataataaccaaggtggggagttctgatagctcaaagtactgaattaatt |
27195554 |
T |
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