View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20996_low_15 (Length: 219)
Name: NF20996_low_15
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 34097114 - 34097304
Alignment:
| Q |
12 |
gtagattattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtatttatcatttcatagggtactacggttatcctagtgaaagttga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34097114 |
gtagattattcttctaatcacatcaaatactgatgttggtgatgctcgtagaggtgtttatcgtttcatagggtactacggttatcctagtgaaagttga |
34097213 |
T |
|
| Q |
112 |
aagcgggattcatggaactttatttgtgatttttcgcaaaatatttctatttcgtggtgcatcattagggattttaatgatatattggatg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34097214 |
aagcgggattcatggaactttatttgtgatttctcgcaaaatatttatatttcgtggtgcatcattagggattttaatgatatattggatg |
34097304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University