View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_16 (Length: 204)
Name: NF20996_low_16
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 7580962 - 7581140
Alignment:
| Q |
9 |
acatcatcaatatttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgacactcttcaaacaatgaaaaacata |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7580962 |
acatcatcaatatttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgatattcttcaaacaatgaaaaacata |
7581061 |
T |
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| Q |
109 |
attgcttgatgctgctaatttcatttaaagatgcacttccataaagcaaaggataaaagtattctaataacttcatttt |
187 |
Q |
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| T |
7581062 |
attgcttgatgctgctaatttcatttgaagatgcacttccttaaagcaaaggataaaagtattctaataacttcatttt |
7581140 |
T |
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Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 4901144 - 4900966
Alignment:
| Q |
9 |
acatcatcaatatttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgacactcttcaaacaatgaaaaacata |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
4901144 |
acatcatcaatatttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgatattcttcaaacaatgaaaaacata |
4901045 |
T |
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| Q |
109 |
attgcttgatgctgctaatttcatttaaagatgcacttccataaagcaaaggataaaagtattctaataacttcatttt |
187 |
Q |
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| T |
4901044 |
attgcttgatgctgctaatttcatttgaagatgcacttccgtaaagcaaaggataaaagtattctaataacttcatttt |
4900966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 20674090 - 20673920
Alignment:
| Q |
20 |
atttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgacactcttcaaacaatgaaaaacataattgcttgatg |
119 |
Q |
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|||||||||||| |||||||||||||||||||| ||| ||||||| ||||| |||||||||| | |||||||||| ||| || | ||| ||||||||| |
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| T |
20674090 |
atttgaatcattatcattggacttttcagttgatcctccaaccatcccattggttttagcttggtattcttcaaacactgagaagcttaactgcttgatg |
20673991 |
T |
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| Q |
120 |
ctgctaatttca--tttaaagatgcacttccataaagcaaaggataaaagtattctaataacttcattttg |
188 |
Q |
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||||||||||| | | |||| ||| |||||||| |||||| | ||||| |||||||||||||||||| |
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| T |
20673990 |
ttgctaatttcaactctgaagacatactcccataaagaaaaggaaagaagtactctaataacttcattttg |
20673920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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