View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_3 (Length: 541)
Name: NF20996_low_3
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 6189615 - 6190138
Alignment:
| Q |
1 |
tatttgcttacttgctctatcaagtaattaatcctcatctctatgtgcttactcccaccatgtgcaatggannnnnnngctagtgcatcaatatgattct |
100 |
Q |
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| T |
6189615 |
tatttgcttacttgctctatcaagtaattacacctcatctctatgtgcttactcctaccatgtgcaatggatttttttgctagtgcatcaatatgattct |
6189714 |
T |
|
| Q |
101 |
accaacaaaataactagaacaataggagtctgatgatgaacaagtggcatcttcaacttactcacatttataatcagacaattcagatcgcaaattaact |
200 |
Q |
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| T |
6189715 |
accaacaaaataactagaacaataggagtctgatgatgaacaagtggcatgttcaacttactcacatttataatcagacaattcagatcgcaaattaact |
6189814 |
T |
|
| Q |
201 |
tttgggttgcacgctcattttacctgcggatactcatttgctttttcatccttatctgggttgcgttgaccttttattgtaggatgttgccaatattttt |
300 |
Q |
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| T |
6189815 |
tttgggttgcacgctcattttacctgcggatactcatttgctttttcatccttatctgggttgtgttgactttttattgtaggatgttgccaatattttt |
6189914 |
T |
|
| Q |
301 |
tattttgaccaccatattcatttgtaatttgacataacggcctccattttataaaataaaccagacatacttcccaattttctagaataaaaaccatagc |
400 |
Q |
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| T |
6189915 |
tattttgaccaccatattcatttgtaatttgacataacggcctccattttataaaataaaccagacatacttcccaattttctagaataaaaaccatagc |
6190014 |
T |
|
| Q |
401 |
tctttggcaaagacacagtccctgaaaatgtggatggaannnnnnnncacgagttgtgcatcttttcgaaataaaaatgttttgtttttgtctgcaaaat |
500 |
Q |
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| T |
6190015 |
tctttggcaaagacacagtccctgaaaatgtggatggaattttttttcacgagttgtgcatcttttcgaaataaaaatgttttgtttttgtctgcacaat |
6190114 |
T |
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| Q |
501 |
tgtcgacaactgacatcgtatatg |
524 |
Q |
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| T |
6190115 |
tgtcgacaactgacatcgtatatg |
6190138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 15039001 - 15039068
Alignment:
| Q |
3 |
tttgcttacttgctctatcaagtaattaatcctcatctctatgtgcttactcccaccatgtgcaatgg |
70 |
Q |
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|||||||||||||||| ||||||||| || |||||| |||||||||||||| | ||||||||||||| |
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| T |
15039001 |
tttgcttacttgctctctcaagtaatgaaacctcatttctatgtgcttacttctcccatgtgcaatgg |
15039068 |
T |
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