View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_4 (Length: 495)
Name: NF20996_low_4
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 4235598 - 4235341
Alignment:
| Q |
10 |
gagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttgtgatggttgagtttttga |
109 |
Q |
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| T |
4235598 |
gagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttgtgatggttgagtttttga |
4235499 |
T |
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| Q |
110 |
aaaagtttgctaatactgagaggttgaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattggatttgtggtgaagtttat |
209 |
Q |
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| T |
4235498 |
aaaagtttgctaatactgagaggttgaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattggatttgtggtgaagtttat |
4235399 |
T |
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| Q |
210 |
accagtctcagataaaccattacttgattttttgaattttaggaagaaatattgaaga |
267 |
Q |
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| T |
4235398 |
accagtctcagacaaacctttacttgattttttgaattttaggaaaagatattgaaga |
4235341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 6184722 - 6184489
Alignment:
| Q |
10 |
gagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttgtgatggttgagtttttga |
109 |
Q |
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| T |
6184722 |
gagaaaaagaatgtctttgaaggaatattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttcaagttgtgatggttgagtttttga |
6184623 |
T |
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| Q |
110 |
aaaagtttgctaatactgagaggttgaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattggatttgtggtgaagtttat |
209 |
Q |
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| T |
6184622 |
agaagtttgctggtacagaaaggttgaattggagagaatggattatttgtattggttttggtgctgtttcttggccaattggttttcttgtgaagttgat |
6184523 |
T |
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| Q |
210 |
accagtctcagataaaccattacttgattttttg |
243 |
Q |
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| T |
6184522 |
acctgtttcagataaaccacttcttgattttttg |
6184489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 29475902 - 29475953
Alignment:
| Q |
10 |
gagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaa |
61 |
Q |
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||||| |||||||| ||||||||||||| ||| ||||||||||||| ||||| |
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| T |
29475902 |
gagaaaaagaatgtttttgaagggatatgtaaaagcaagttgttttagggaa |
29475953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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