View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_5 (Length: 360)
Name: NF20996_low_5
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 13324769 - 13325098
Alignment:
| Q |
17 |
atgaattccaattccaatcggtttttaaattgctagttattaaattggatcactttcgttcatctattcttaattttcaaggctgtttcgtttggcaact |
116 |
Q |
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| T |
13324769 |
atgaattccaattccaatcggtttttaaattgctagttattaaattggaccactttcgtttatctattcttaattttcaaggctgtttcgtttggcaact |
13324868 |
T |
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| Q |
117 |
ctgatatcttaaccgaattattttggcaacactgttcgttcatatattgtagtcgtttcagacttgtttccttccattgaattagtgcaatcgcgttaat |
216 |
Q |
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| T |
13324869 |
ctgatatcttaaccgaattattttggcaacactgttcgttcatatattgtagtcgtttcagacttgtttccttccattgaattagtgcaatcgcgttaat |
13324968 |
T |
|
| Q |
217 |
accatgtgtgttacaaagattgagtcacgctatttcatcattgggaacttttctctaccgattttcttcatattgtcaaaattgcagaatttcgccttta |
316 |
Q |
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| T |
13324969 |
accatgtgtgttacaaagattgagtcacgctatttcatcattgggaacttttctctaccgattttcttcatattgtcaaaattgcagaatttcgccttta |
13325068 |
T |
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| Q |
317 |
agcttttgattgttgccacggtttgattta |
346 |
Q |
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| T |
13325069 |
agcttttgattgttgccacggtttgattta |
13325098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 20387571 - 20387657
Alignment:
| Q |
181 |
tgtttccttccattgaattagtgcaatcgcgttaataccatgtgtgttacaaagattgagtcacgct-atttcatcattgggaacttt |
267 |
Q |
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| T |
20387571 |
tgtttctttccattgaattagtgcaatcgcgttaatacaat-cgtgttacaaagattgaatcacactaaattcatcattaggaacttt |
20387657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 25977435 - 25977387
Alignment:
| Q |
190 |
ccattgaattagtgcaatcgcgttaataccatgtgtgttacaaagattga |
239 |
Q |
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| T |
25977435 |
ccattgaattagtgcaatcgcgttaata-tatttgtgttacaaagattga |
25977387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 12100353 - 12100396
Alignment:
| Q |
41 |
ttaaattgctagttattaaattggatcactttcgttcatctatt |
84 |
Q |
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| T |
12100353 |
ttaaattgctagttattaaattggatcacgttcctccatctatt |
12100396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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