View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_6 (Length: 301)
Name: NF20996_low_6
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 5470196 - 5469934
Alignment:
| Q |
17 |
tgacttaaaactaagtaattatacttgtataaatgttgttaataaataaataaattgaatatacataatgaggaatggagtaaaccattcagcgctacac |
116 |
Q |
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| T |
5470196 |
tgacttaaaactaagtaattatacttgtataaatgttgttaataaataaataaattgaatatacataatgaggaatggagtaaaccattcagcgctacac |
5470097 |
T |
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| Q |
117 |
gttgttcaaaagttatcaaataaatataacatacactcttggtatcaaatccaatttaccaaatcaaaatgtgagttattcgatcttaatctgatgatcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5470096 |
gttgttcaaaagttatcaaataaatataacatacactcttggtatcaaatccaatttaccaaatcaaaatgtgagttattcgatcttaatctgatgatcc |
5469997 |
T |
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| Q |
217 |
gaattgtgcgactgtgacaaatgtgtgatcatttatctgcctacttagcttgtcatgtaaatg |
279 |
Q |
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| T |
5469996 |
gaattgtgcgactgtgacaaatgtgtgatcatttatctacctacttagtttgtcatgtaaatg |
5469934 |
T |
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