View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20996_low_9 (Length: 250)
Name: NF20996_low_9
Description: NF20996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20996_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7035873 - 7035641
Alignment:
| Q |
1 |
tattttgttcgtatgcagactgatattattcataattttttattctacgtaggtgttttatatatctcctgaagtgttggagaaactgaagcagcaacag |
100 |
Q |
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| T |
7035873 |
tattttgtccgtatgcagactgatattattcataattttttattccacgtaggtgttttatatatctcccgaagtgttggagaaactgaagcagcaacag |
7035774 |
T |
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| Q |
101 |
aaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccga |
200 |
Q |
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| T |
7035773 |
aaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccga |
7035674 |
T |
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| Q |
201 |
aagaggctgtttgtttgaaggctatttcattctacct |
237 |
Q |
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| T |
7035673 |
aagaggctg----tttgaaggctatttcattctacct |
7035641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7897113 - 7896885
Alignment:
| Q |
1 |
tattttgttcgtatgcagactgatattattcataattttttattctacgtaggtgttttatatatctcctgaagtgttggagaaactgaagcagcaacag |
100 |
Q |
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| T |
7897113 |
tattttgcccgtatgcacactgatgttattcataattttttattctacgtaggtttttg---tatctcccgaagtgttggagacactgaagcagcaacaa |
7897017 |
T |
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| Q |
101 |
aaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccga |
200 |
Q |
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| T |
7897016 |
aaggttaatattctcccttgtctaaaaa-tgtgtgtatctcaattatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccga |
7896918 |
T |
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| Q |
201 |
aagaggctgtttgtttgaaggctatttcattctacct |
237 |
Q |
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| T |
7896917 |
aagaggctg----tttgaaggctatttcattctacct |
7896885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 7039336 - 7039219
Alignment:
| Q |
101 |
aaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttag----ctatcaattgcaa-ttgaattt-cttactattggattctt |
194 |
Q |
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|||||| ||| ||||||||||| |||||| | ||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||| |||||||| |
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| T |
7039336 |
aaggtttatcctctcccttgtcctaaaaatat-tgtatctcaagtatgtgggctagctatctatcaattgcaagttgaatttatttactatcggattctt |
7039238 |
T |
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| Q |
195 |
aaccgaa-agaggctgttt |
212 |
Q |
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| T |
7039237 |
aaccgaacagaggctgttt |
7039219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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