View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20997_high_2 (Length: 680)
Name: NF20997_high_2
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20997_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 119 - 470
Target Start/End: Original strand, 29643179 - 29643534
Alignment:
| Q |
119 |
taaaataaagtattatgattgaaatggagaaagacaaaaatatcaaatatacttctaaattctaatgtcccacagatgagcttcatatctgtctgtccat |
218 |
Q |
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| T |
29643179 |
taaaataaagtattatgattgaaatggagaaagacaaaaatatcaaatatacttctaaattctagtgtcccacagatgagcttcatatctgtctgtccat |
29643278 |
T |
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| Q |
219 |
cagtgcctaattnnnnnnn-tactaattaaatttcagatacaagaacttgatacagaaaattaattaagaacatatatagtaacccattcattccataca |
317 |
Q |
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| T |
29643279 |
cagtgcctaattaaaagaaatacaaataaaatttcagatacaagaaattgatacagaaaattaattaagaacata----gtaacccattcattccatacg |
29643374 |
T |
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| Q |
318 |
ataaaaagagtttgcatcctgttatgtttgaatctaacatgagaggtacaaccaaccaaccaaaacccttttttgtattgatct-------gtaataacc |
410 |
Q |
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| T |
29643375 |
ataaaaagagtttgcatcctgttatgtttgaatctaacatgagaggtacaaccaaccaaccaaaaccgttttttgtattgatctgtaataagtaataacc |
29643474 |
T |
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| Q |
411 |
taaaaatggtaatcatatatgtcaaatagttgaaagagaaaaggaaacataagagagaat |
470 |
Q |
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| T |
29643475 |
taaaaatggtaatcatatatgttgaatagttgaaagagaaaaggaaacataagagagaat |
29643534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 494 - 665
Target Start/End: Original strand, 29643541 - 29643712
Alignment:
| Q |
494 |
atttcgtttgaaaacttggaaatacataaagaaacaaacatgtcttcaaagttcaaaagataaacttgagaaccttgatgatgcatagattagacagatc |
593 |
Q |
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| T |
29643541 |
atttcgtttaaaaaccaggaaatacataaagaaacaaacatgtcttcaaagttcaaaatataaacttgagaaccttgatgatgcatagattagacagatc |
29643640 |
T |
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| Q |
594 |
aaaatataaatataacggtgcaagtgttgttcatcaagtactgtctggctttggctgctttcgggtgaaaac |
665 |
Q |
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| T |
29643641 |
aaaatataaatataacggtgcaagtgcgtttcatcaggtactgtctggctttggctgctttcgggcgaaaac |
29643712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 29642792 - 29642854
Alignment:
| Q |
16 |
aatataagtatgccttcaaagttcgaacttgatcatatcgtgtgtataactaatagaaaacaa |
78 |
Q |
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| T |
29642792 |
aatataagtatgccttcaaagttcaaacttgatcatattgtgtgtataactaatagaaaacaa |
29642854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 29642723 - 29642771
Alignment:
| Q |
242 |
aattaaatttcagatacaagaacttgatacagaaaattaattaagaaca |
290 |
Q |
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| T |
29642723 |
aattaaaattcagatacaagaaatctatacaaaaaattaattaagaaca |
29642771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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