View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20997_high_5 (Length: 418)
Name: NF20997_high_5
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20997_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 8003149 - 8003542
Alignment:
| Q |
16 |
atgttatagtgaatattgtcatatctttttatttttaaaataataatataacatttaactattttctcttttcattgagaaaattcttactcttatattt |
115 |
Q |
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| T |
8003149 |
atgttatagtgaatattgtcatatctttttatttttaaaataataatataacatttaactattttctcttttcattgagaaaattcttactcttatattt |
8003248 |
T |
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| Q |
116 |
gtatacctgaaagcactggttggatcccattaagaattagagtgacagccaagtatggacacaaatctgatactgcatttgcaacagtttcaccttcggt |
215 |
Q |
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| T |
8003249 |
gtatacctgaaagcactggttggatcccattaagaattagagtgacagccaagtatggacacaaatctgatactgcatttgcaacagtttcaccttcggt |
8003348 |
T |
|
| Q |
216 |
gaatacgtaacttataacatgacgaagtgcaaggaccacaattgcttctatcacagcaataatgaatgaaaccatgttcacaataaccactgaaaatgct |
315 |
Q |
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| T |
8003349 |
gaatacgtaacttataacatgacgaagtgcaaggaccacaattgcttctatcaccgcaataatgaatgaaaccatattcacaataaccactgaaaatgct |
8003448 |
T |
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| Q |
316 |
gctgcttttggactcccagctcccaattcgttgctcactctcacactgta----aatcaattctcgcaaaaacttgttacaaacaagtatatat |
405 |
Q |
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| T |
8003449 |
gctgcttttggattcccagatcccaattcgttgctcactctcacactgtaaattaatcaattctcgcaaaaacttgttacaaacaagtatatat |
8003542 |
T |
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