View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20997_low_10 (Length: 309)
Name: NF20997_low_10
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20997_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 77 - 293
Target Start/End: Original strand, 77757 - 77973
Alignment:
| Q |
77 |
gatgattttgaggggtttggtagatattggtggtggcgaagtagtgaaggatgaagttgctcgtgaactagggtttgagaaagtatcagaagaattcatt |
176 |
Q |
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| T |
77757 |
gatgattttgaggggtttggtagatattggtggtggcgaagtagtgaaggatgaagttgcgcgtgaactagggtttgagaaagtatcagaagaattcatt |
77856 |
T |
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| Q |
177 |
ccagaatgcaaatcaaaagcagtacttttcaaacacgtcaagacgggtgcacaagtcatctctgtttcaaacaaagatgagaacaaagtctttggcattg |
276 |
Q |
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| T |
77857 |
ccagaatgcaaatcaatagcagtacttttcaaacacgtcaagacgggtgcacaagtcatctctgtttcaaacaaagatgagaacaaagtctttggcattg |
77956 |
T |
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| Q |
277 |
ttttccgaactcctccc |
293 |
Q |
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| T |
77957 |
ttttccgaactcctccc |
77973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 77673 - 77711
Alignment:
| Q |
1 |
cgtttcttctccaggtatctatctatctatttctctcca |
39 |
Q |
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| T |
77673 |
cgtttcttctccaggtatctatctatctatttctctcca |
77711 |
T |
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