View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20997_low_11 (Length: 286)
Name: NF20997_low_11
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20997_low_11 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 286
Target Start/End: Complemental strand, 42821370 - 42821087
Alignment:
| Q |
5 |
cataatatacatgtgttagatcacatttcaaatttatagttgcacctaatgcaagactccctatataagataagattcataaaagaaggtttgtccataa |
104 |
Q |
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| T |
42821370 |
cataatatacatgtgttagatcacatttcaaatttatagttgcacctaatgcaagactccctatataagataagattcataaaagaaggtttgtccataa |
42821271 |
T |
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| Q |
105 |
tataatgtgttcatatttattaaaggaatcattcacttttacatgtgtttatattattaatgtcacattttaaaatttagaattatacactaatgtaagg |
204 |
Q |
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| T |
42821270 |
tataatgtgttcatatttattaaaggaatcattcacttttacatgtgtttatattattaatgtaacattttaaaatttagaattatacactaatgtaagg |
42821171 |
T |
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| Q |
205 |
cttcctatttgaaataaaattctaaaaagaagtttgtgcata--ataaacatatgtttatattgatttaagcaataatattcat |
286 |
Q |
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| T |
42821170 |
cttcctatttgaaataaaattctaaaaagaagtttgtgcataatataaacatatgtttatattgatttaagcaataatattcat |
42821087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 11670040 - 11669876
Alignment:
| Q |
118 |
tatttattaaaggaatcattcacttttacatgtgtttatattattaatgtcacattttaaaatttagaattatacactaa-tgtaaggcttcct---att |
213 |
Q |
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| T |
11670040 |
tattgattaaaggaaaaattcatttttacatgtatttatattactaggttcacattg--atatttataattataaactaaatgtaaggctttctcaaata |
11669943 |
T |
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| Q |
214 |
tgaaataaaattctaaaaagaagtttgtgcataataaacatatgtttatattgatttaagcaataat |
280 |
Q |
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| T |
11669942 |
tcaaataaaattcaaacaagaagtttgtgcttagtaaacatatgttaatattgatttaagcaataat |
11669876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 283
Target Start/End: Complemental strand, 11666759 - 11666591
Alignment:
| Q |
114 |
ttcatatttattaaaggaatcattcacttttacatgtgtttatattattaatgtcacattttaaaatttagaattatacactaatgtaaggcttcctatt |
213 |
Q |
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| T |
11666759 |
ttcatatttattgaaggaaacattcatttttacaagtatttatattattttgttgacatttcaaa-tatggtattatactctaatgcaaggcttccaaaa |
11666661 |
T |
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| Q |
214 |
tgaaataaaattctaaaaagaagtttgtgcataataaacatatgtttatattgatttaagcaataatatt |
283 |
Q |
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| T |
11666660 |
tcaaataaaattaaaacaagaagtttgaatatagtaaacatatgtttatgttaatttaagcaataatatt |
11666591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 11669425 - 11669321
Alignment:
| Q |
179 |
atttagaattatacactaatgtaaggcttcct---atttgaaataaaattctaaaaagaagtttgtgcataataaacatatgtttatattgatttaagca |
275 |
Q |
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|||||||||||||||| ||| |||| |||||| || | |||||||| || || ||||||||||||| || |||||||||||| ||||||||| ||||| |
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| T |
11669425 |
atttagaattatacaccaatataagacttcctcaaatatcaaataaaactcaaacaagaagtttgtgcttagtaaacatatgttaatattgattgaagca |
11669326 |
T |
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| Q |
276 |
ataat |
280 |
Q |
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||||| |
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| T |
11669325 |
ataat |
11669321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 11669564 - 11669460
Alignment:
| Q |
179 |
atttagaattatacactaatgtaaggcttcct---atttgaaataaaattctaaaaagaagtttgtgcataataaacatatgtttatattgatttaagca |
275 |
Q |
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||||| |||||||||| |||||||||||| || || | |||||||||| || || || ||||||| ||||||||||||||| ||||||||||||||| |
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| T |
11669564 |
atttaaaattatacaccaatgtaaggctttctcaaatatcaaataaaatttaaacaaaaaatttgtgcttaataaacatatgttaatattgatttaagca |
11669465 |
T |
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| Q |
276 |
ataat |
280 |
Q |
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||||| |
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| T |
11669464 |
ataat |
11669460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 11669703 - 11669599
Alignment:
| Q |
179 |
atttagaattatacactaatgtaaggcttcct---atttgaaataaaattctaaaaagaagtttgtgcataataaacatatgtttatattgatttaagca |
275 |
Q |
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| T |
11669703 |
atttagaattatacaccattgtaagacttcctcaaatatcaaataaaattcaaacaagaattttgtgcttagtaaacatatgttaatattgatttaagcg |
11669604 |
T |
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| Q |
276 |
ataat |
280 |
Q |
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||||| |
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| T |
11669603 |
ataat |
11669599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 11669841 - 11669738
Alignment:
| Q |
179 |
atttagaattatacactaatgtaaggcttcct---atttgaaataaaattctaaaaagaagtttgtgcataataaacatatgtttatattgatttaagca |
275 |
Q |
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|||||||||||||||| ||||||||||||||| || | ||||||||||| || ||||||||||| | || ||||||||| || ||||||||||| ||| |
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| T |
11669841 |
atttagaattatacaccaatgtaaggcttcctcaaatatcaaataaaattcaaacaagaagtttgtacttagtaaacatat-ttaatattgatttatgca |
11669743 |
T |
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| Q |
276 |
ataat |
280 |
Q |
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||||| |
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| T |
11669742 |
ataat |
11669738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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