View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20997_low_12 (Length: 274)
Name: NF20997_low_12
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20997_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 37899272 - 37899019
Alignment:
| Q |
1 |
acacgccgtcatcaataaacctgccaaaatagagatggaaccnnnnnnnnnngtgagtagattatataaatagagcagtaagtgagcttctacttcaatg |
100 |
Q |
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| T |
37899272 |
acacgccgtcatcaataaacctgccaaaatagagatggaaccaaaaaaaaaagtgagtagattatataaatagagctgtaagtgagcttctacttcaatg |
37899173 |
T |
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| Q |
101 |
cttcaaattcaattgctaatgttttcaattccatgacgatggaaacaccaatgctcaaagtgacactaaaaagctacttaaattcagtccataccaatta |
200 |
Q |
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| T |
37899172 |
cttcaaattcaattgctaatgttttcaattccatgacgatggaaacaccaatgctcaaagtgacactaaaaagctacttaaattcagtccataccaatta |
37899073 |
T |
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| Q |
201 |
aaataacagtaaaacaaaaacaaaagatatcttaataccagccagacaaaggac |
254 |
Q |
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| T |
37899072 |
aaataacagtaaaacaaaaacaaaagatatctaaataccagccagacaaaggac |
37899019 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 29150966 - 29151032
Alignment:
| Q |
109 |
tcaattgctaatgttttcaattccatgacgatggaaacaccaatgctcaaagtgacactaaaaagctac |
177 |
Q |
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| T |
29150966 |
tcaatggctaatgttttcaattctaggaagatggaagcaccaatgctcaaa--gacacttaaaagctac |
29151032 |
T |
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