View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20997_low_3 (Length: 450)

Name: NF20997_low_3
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20997_low_3
NF20997_low_3
[»] chr8 (4 HSPs)
chr8 (11-360)||(14223004-14223353)
chr8 (58-230)||(14227340-14227512)
chr8 (98-262)||(14229623-14229784)
chr8 (306-346)||(11815810-11815850)
[»] chr3 (3 HSPs)
chr3 (278-360)||(16151808-16151890)
chr3 (317-360)||(16152731-16152774)
chr3 (50-95)||(17355786-17355831)
[»] chr2 (2 HSPs)
chr2 (311-347)||(18638544-18638580)
chr2 (306-352)||(42205873-42205919)
[»] chr5 (2 HSPs)
chr5 (303-352)||(9878067-9878116)
chr5 (303-352)||(9897917-9897966)
[»] scaffold0024 (1 HSPs)
scaffold0024 (306-352)||(18146-18192)
[»] chr6 (1 HSPs)
chr6 (315-353)||(10341030-10341068)
[»] chr7 (1 HSPs)
chr7 (42-94)||(41006851-41006903)
[»] chr1 (1 HSPs)
chr1 (238-270)||(40158374-40158406)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 14223353 - 14223004
Alignment:
Q  11 cataggcaatttgtgaagagtaacccacggcggtggtgccatagtccgcaatggaatgtttaaatggcgtatttttggccttccgctatcgacaacaatt 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14223353 cataggcaatttgtgaagagtaaaccacggcggtggtgccatagtccgcaatggaatgtttaaatggcgtatttttggccttctgctatcgacaacaatt 14223254  T
Q  111 ttgggcaatcaaagtgtgatctaagaaaacctaaacctcaagaatcaaactacaaagacacattgtcctgataaaggagaaagtcaaatgaaaggcatcc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223253 ttgggcaatcaaattgtgatctaagaaaacctagacctcaagaatcaaactacaaagacacattgtcctgataaaggagaaagtcaaatgaaaggcatcc 14223154  T
Q  211 aacaatcatcaaaatgaataatatcatctctatagcacagacacttctgatcaaatacgttttcggcgtccgacatgacacatacacgacaaatattctc 310  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  14223153 aacaatcatcaaaatgaataatatcatctctatagcaccgacacttctgatcaaatacgttttcggcgtctgacatgacacatacacgacacatattctc 14223054  T
Q  311 aaaatattattggtgtcgacatgtcagtgtcgtgtccggtgttgcatttc 360  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  14223053 aaaatattattggtgtcgacatatcagtgtcgtgtcaggtgttgcatttc 14223004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 14227512 - 14227340
Alignment:
Q  58 gcaatggaatgtttaaatggcgtatttttggccttccgctatcgacaacaattttgggcaatcaaagtgtgatctaagaaaacctaaacctcaagaatca 157  Q
    ||||||| ||||||| ||| || ||||||||||||| || ||| | |||| || | ||||||||||||||||||||||||||||||||||||||||||||    
T  14227512 gcaatggcatgtttatatgacggatttttggccttcagccatcaaaaacacttatcggcaatcaaagtgtgatctaagaaaacctaaacctcaagaatca 14227413  T
Q  158 aactacaaagacacattgtcctgataaaggagaaagtcaaatgaaaggcatccaacaatcatcaaaatgaata 230  Q
    |||||||||||||||||||| | |||||| || ||||||| ||||||||||||| ||||||||||||||||||    
T  14227412 aactacaaagacacattgtcttaataaagaagtaagtcaagtgaaaggcatccagcaatcatcaaaatgaata 14227340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 14229784 - 14229623
Alignment:
Q  98 atcgacaacaattttgggcaatcaaagtgtgatctaagaaaacctaaacctcaagaatcaaactacaaagacacattgtcctgataaaggagaaagtcaa 197  Q
    ||||| |||| ||| ||| |||||||| |||||| ||  ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  14229784 atcgagaacagtttcggggaatcaaagagtgatcaaaacaaacctaaacctcgagaatcaaactacaaagacacattgtcctaataaaggagaaagtcaa 14229685  T
Q  198 atgaaaggcatccaacaatcatcaaaatgaataatatcatctctatagcacagacacttctgatc 262  Q
     ||||||  | ||||||| |||||||||   | |||| ||||||||||||| |||||||||||||    
T  14229684 gtgaaagatacccaacaaccatcaaaat---ttatattatctctatagcactgacacttctgatc 14229623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 11815850 - 11815810
Alignment:
Q  306 ttctcaaaatattattggtgtcgacatgtcagtgtcgtgtc 346  Q
    |||||||| ||||||||||||| || |||||||||||||||    
T  11815850 ttctcaaattattattggtgtcaacgtgtcagtgtcgtgtc 11815810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 16151808 - 16151890
Alignment:
Q  278 gtccgacatgacacatacacgacaaatattctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgttgcatttc 360  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16151808 gtccgacatgacacatacacgacacatattctcaaaatattattggtgtcgacatatcagtgtcgtgtccggtgttgcatttc 16151890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 16152731 - 16152774
Alignment:
Q  317 ttattggtgtcgacatgtcagtgtcgtgtccggtgttgcatttc 360  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  16152731 ttattggtgtcgacatgtcagtgtcgtgtccgatgttgcatttc 16152774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 17355786 - 17355831
Alignment:
Q  50 catagtccgcaatggaatgtttaaatggcgtatttttggccttccg 95  Q
    ||||| ||||||||| ||||||| |||||| |||||||||||||||    
T  17355786 cataggccgcaatggcatgtttatatggcgaatttttggccttccg 17355831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 18638580 - 18638544
Alignment:
Q  311 aaaatattattggtgtcgacatgtcagtgtcgtgtcc 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  18638580 aaaatattattggtgtcgacatgtcagtgtcgtgtcc 18638544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 42205873 - 42205919
Alignment:
Q  306 ttctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgt 352  Q
    |||||||| |||||||||||| | ||||||| |||||||||||||||    
T  42205873 ttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgt 42205919  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 9878067 - 9878116
Alignment:
Q  303 atattctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgt 352  Q
    ||||||||||| |||||||||||||||| |||||||||| ||| ||||||    
T  9878067 atattctcaaattattattggtgtcgacgtgtcagtgtcttgttcggtgt 9878116  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 9897917 - 9897966
Alignment:
Q  303 atattctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgt 352  Q
    ||||||||||| |||||||||||||||  ||| |||| ||||||||||||    
T  9897917 atattctcaaattattattggtgtcgatgtgtgagtgccgtgtccggtgt 9897966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 18146 - 18192
Alignment:
Q  306 ttctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgt 352  Q
    |||||||||| |||| ||||||||| ||||||||||||||| |||||    
T  18146 ttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgtctggtgt 18192  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 10341068 - 10341030
Alignment:
Q  315 tattattggtgtcgacatgtcagtgtcgtgtccggtgtt 353  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  10341068 tattactggtgtcgacatgtcagtgtcatgtccggtgtt 10341030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 41006851 - 41006903
Alignment:
Q  42 ggtggtgccatagtccgcaatggaatgtttaaatggcgtatttttggccttcc 94  Q
    ||||||||||||| || |||||| ||||||| |||||||| || |||||||||    
T  41006851 ggtggtgccataggccacaatggcatgtttatatggcgtacttctggccttcc 41006903  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 40158374 - 40158406
Alignment:
Q  238 ctctatagcacagacacttctgatcaaatacgt 270  Q
    ||||||||||| |||||||||||||||||||||    
T  40158374 ctctatagcaccgacacttctgatcaaatacgt 40158406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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